The Zhao Bioinformatics Laboratory psRNATarget: A Plant Small RNA Regulator Target Analysis Server

Searching Regulatory Targets Searching Small RNA Regulators Custom Searching Regulators & Targets

Upload miRNA sequence(s) in FASTA format:           [Load demo data]   or paste sequences below: - file / input sequence size limit: 2 Mb. - invalid small RNAs will be ignored during analysis.          Select a transcript/genomic library for target search: Arabidopsis thaliana TAIR6, cDNA, released 11/08/2005 Arabidopsis thaliana TAIR7, cDNA, released 04/25/2007 Arabidopsis thaliana DFCI Gene Index (AGI) Release 13 Arabidopsis thaliana, Genome(01/22/2004), 3.4K segments from +/- strand with 0.4K overlapped region Brassica napus (oilseed_rape) DFCI Gene Index (BNGI) Release 3 Chlamydomonas reinhardtii DFCI Gene Index (CHRGI) Release 5 Coffea canephora (coffee) SGN unigene, ftp://ftp.sgn.cornell.edu/unigene_builds/Coffea_canephora.seq Festuca_arundinacea (tall_fescue) DFCI Gene Index (FAGI) Release 1 Glycine max (soybean) DFCI Gene Index (GMGI) Release 12 Gossypium (cotton) DFCI Gene Index (CGI) Release 8 Gossypium (cotton) DFCI Gene Index (CGI) Release 9 Gossypium (cotton) DFCI Gene Index (CGI) Release 10 Hordeum vulgare (barley) DFCI Gene Index (HVGI) Release 9 Lycopersicon esculentum (tomato) SGN unigene, ftp://ftp.sgn.cornell.edu/unigene_builds/Tomato.seq Lycopersicon esculentum (tomato) DFCI Gene Index (LGI) Release 11 Lotus japonicus (lotus) DFCI Gene Index (LJGI) Release 3 Medicago truncatula DFCI Gene index (MTGI) Release 8 Medicago truncatula DFCI Gene index (MTGI) Release 9 Medicago truncatula Mt2.0 cDNA library, http://www.medicago.org/ Medicago truncatula Mt3.0 cDNA library plus MTGI9 Nicotiana benthamiana DFCI Gene Index (NBGI) Release 2 Nicotiana tabacum (tobacco) DFCI Gene Index (NTGI) Release 3 Nicotiana tabacum (tobacco) SGN unigene, ftp://ftp.sgn.cornell.edu/unigene_builds/Nicotiana_tabacum.seq Oryza sativa (rice) TIGR genome cDNA OSA1 Release 5(OSA1R5) Oryza sativa (rice) DFCI Gene index (OGI) Release 17 Oryza sativa (rice) OSA1R5 Genome, 3.4K segments from +/- strand with 0.4K overlapped region Physcomitrella patens (moss) JGI Gene Transcripts V1.1, http://genome.jgi-psf.org/Phypa1_1/Phypa1_1.download.ftp.html Populus trichocarpa (poplar) JGI Gene Transcripts V1.1, http://genome.jgi-psf.org/Poptr1_1/ Populus trichocarpa (poplar) DFCI Gene Index (PPLGI) Release 3 Populus trichocarpa (poplar) Genome Assembly R1.0, 3.4K segments from +/- strand with 0.4K overlapped region Solanum tuberosum (potato) DFCI Gene Index (STGI) Release 11 Triticum aestivum (wheat) DFCI Gene Index (TAGI) Release 9 Vitis vinifera (grape) DFCI Gene Index (VVGI) Release 5 Zea mays (maize) DFCI Gene Index (ZMGI) Release 17   Maximum expectation(range: 0-5):         Maximum circles(range: 1-3):           Your Email (optional):

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