The Zhao Bioinformatics Laboratory
pssRNAMiner: A Plant Short Small RNA Regulatory Cascade Analysis Server  
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Below is a series of test data prepared for user to download. These data were collected from various published small RNA libraries and converted into FASTA format by FASTA FORMAT MAKER. Users can query the pre-run result by clicking the most right link.
Species Library Type
Description
 Original source # of small RNA
Candidate phase-initiators for pre-analysis
 pre-analysis result for query
Arabidopsis Thaliana RDR MPSS
Variety Col_0, 17-bp MPSS small RNAs library, t/r/sno/snRNAs removed.
 Arabidopsis MPSS Plus 11767 link
Arabidopsis Thaliana FLR MPSS
Variety Col_0, 17-bp MPSS small RNAs library, t/r/sno/snRNAs removed.
 Arabidopsis MPSS Plus 65906 link
Arabidopsis Thaliana SD1 MPSS
Variety Col_0, 17-bp MPSS small RNAs library, t/r/sno/snRNAs removed.
 Arabidopsis MPSS Plus 24778 link
Arabidopsis Thaliana SD2 MPSS
Variety Col_0, 17-bp MPSS small RNAs library, t/r/sno/snRNAs removed.
 Arabidopsis MPSS Plus 30324 link
Arabidopsis Thaliana 4Col0 454
Variety Col_0, the first 17 bp of 17-24 nt small RNAs, t/r/sno/snRNAs removed.
 Arabidopsis MPSS Plus 7674 link
Arabidopsis Thaliana 4dcl17 454
Variety Col_0, the first 17 bp of 17-24 nt small RNAs, t/r/sno/snRNAs removed.
 Arabidopsis MPSS Plus 12095 link
Arabidopsis Thaliana 4dcl234 454
Variety Col_0, the first 17 bp of 17-24 nt small RNAs, t/r/sno/snRNAs removed.
 Arabidopsis MPSS Plus 3044 link
Arabidopsis Thaliana 4rdr2 454
Variety Col_0, the first 17 bp of 17-24 nt small RNAs, t/r/sno/snRNAs removed.
 Arabidopsis MPSS Plus 1326 link
Arabidopsis Thaliana 4rdr6 454
Variety Col_0, the first 17 bp of 17-24 nt small RNAs, t/r/sno/snRNAs removed.
 Arabidopsis MPSS Plus 4427 link
Arabidopsis Thaliana ASRP Integ.
Arabidopsis Small RNA Project(ASRP), integrated database, the first 17 bp of 17-24 nt small RNAs.
 ASRP 176694 link
Oryza Sativa STM MPSS
Genotype: Nipponbare, 17-bp MPSS small library, t/r/sno/snRNAs removed.
 Rice MPSS 55794 link
Oryza Sativa SNU MPSS
Genotype: Nipponbare, 17-bp MPSS small library, t/r/sno/snRNAs removed.
 Rice MPSS 32352 link
Oryza Sativa FLR MPSS
Genotype: Nipponbare, 17-bp MPSS small library, t/r/sno/snRNAs removed.
 Rice MPSS 117577 link
Oryza Sativa SNM MPSS
Genotype: Nipponbare, 17-bp MPSS small library, t/r/sno/snRNAs removed.
 Rice MPSS 30091 link
Oryza Sativa ABA MPSS
Genotype: Nipponbare, 17-bp MPSS small library, t/r/sno/snRNAs removed.
 Rice MPSS 32623 link
Oryza Sativa UNT MPSS
Genotype: Nipponbare, 17-bp MPSS small library, t/r/sno/snRNAs removed.
 Rice MPSS 52094 link
Note: Users typically need to wait 0.5-6 hours for result. The detailed time depends on small RNA library size and transcript library size.
 


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