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List view: phased small RNA clusters [#Session ID: 1208271881196835]

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Cluster ID Phased small RNA(s) # of hit position
[phased:non-phased]
P-value Matched transcript Transcript description # of cleavage sites guided by input phase-initiator # of complementary regions
#2881 AAACTATTCACTTGATT;
AAGAGTAAGATGGATCT;
AATACTTGAACTACCAT;
AATCTATTGAACATCGT;
ACACGATGTTCAATAGA;
AGTTACAACTTTTTTTA;
ATAATCAAGTGAATAGT;
ATATCCCATTTCTACCA;
ATATGGGATTAAAGACC;
ATATGTTTCAGTCTTAT;
ATGGTAGTTCAAGTATT;
CAAAATACACAAGTTCA;
CAAGCGAATGATGATAC;
CACGATGTTCAATAGAT;
CATAGGTCTTTAATCCC;
CGTAAAAAAAGTTGTAA;
CTACCATCCGATCAACA;
GAATACTTGAACTACCA;
GATGGTAGTTCAAGTAT;
GTAAAAAAAGTTGTAAC;
GTTACAACTTTTTTTAC;
TACCATCCGATCAACAA;
TAGGTATTCGAGTATAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATGGGATTAAAGACCT;
TCCAAGCGAATGATGAT;
TCTACCATCCGATCAAC;
TGAACTTGTGTATTTTG;
TGCATATACTCGAATAC;
TGGAATACTTGAACTAC;
TGTTGATCGGATGGTAG;
TTCTACCATCCGATCAA;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGAACTTGTGTATTT
20 : 33 2.886e-16 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#2815 AAACTATTCACTTGATT;
AAGAGTAAGATGGATCT;
AATACTTGAACTACCAT;
AATCTATTGAACATCGT;
ACACGATGTTCAATAGA;
AGTAAGATGGATCTTGA;
AGTTACAACTTTTTTTA;
ATAATCAAGTGAATAGT;
ATATCCCATTTCTACCA;
ATATGGGATTAAAGACC;
ATATGTTTCAGTCTTAT;
ATGGTAGTTCAAGTATT;
CAAAATACACAAGTTCA;
CACGATGTTCAATAGAT;
CATAGGTCTTTAATCCC;
CGTAAAAAAAGTTGTAA;
CTACCATCCGATCAACA;
GAATACTTGAACTACCA;
GATGGTAGTTCAAGTAT;
GTAAAAAAAGTTGTAAC;
GTTACAACTTTTTTTAC;
TACCATCCGATCAACAA;
TAGGTATTCGAGTATAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATGGGATTAAAGACCT;
TCAAGATCCATCTTACT;
TCTACCATCCGATCAAC;
TGAACTTGTGTATTTTG;
TGCATATACTCGAATAC;
TGGAATACTTGAACTAC;
TGTTGATCGGATGGTAG;
TTCTACCATCCGATCAA;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGAACTTGTGTATTT
20 : 34 4.473e-16 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#2832 AAACTATTCACTTGATT;
AAGAGTAAGATGGATCT;
AATACTTGAACTACCAT;
AATCTATTGAACATCGT;
ACACGATGTTCAATAGA;
AGTAAGATGGATCTTGA;
AGTTACAACTTTTTTTA;
ATAATCAAGTGAATAGT;
ATATCCCATTTCTACCA;
ATATGGGATTAAAGACC;
ATATGTTTCAGTCTTAT;
ATGGTAGTTCAAGTATT;
CAAAATACACAAGTTCA;
CACGATGTTCAATAGAT;
CATAGGTCTTTAATCCC;
CGTAAAAAAAGTTGTAA;
CTACCATCCGATCAACA;
GAATACTTGAACTACCA;
GATGGTAGTTCAAGTAT;
GTAAAAAAAGTTGTAAC;
GTTACAACTTTTTTTAC;
TACCATCCGATCAACAA;
TAGGTATTCGAGTATAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATGGGATTAAAGACCT;
TCAAGATCCATCTTACT;
TCTACCATCCGATCAAC;
TGAACTTGTGTATTTTG;
TGCATATACTCGAATAC;
TGGAATACTTGAACTAC;
TGTTGATCGGATGGTAG;
TTCTACCATCCGATCAA;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGAACTTGTGTATTT
20 : 34 4.473e-16 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#258 AAAGCTTCAGAAGCAGT;
AGAATAAAGGCTAATGT;
AGAGGATGTCAACCAGA;
AGATCTGGTTGACATCC;
ATAGTCTCTGCAAATAT;
CAGATCTGGTTGACATC;
CCACTGCTTCTGAAGCT;
CTTCCATCTTGTTGAGC;
GATCTGGTTGACATCCT;
TAGTCTCTGCAAATATA;
TATATTTGCAGAGACTA;
TATTGATTTGGCTTTAA;
TGATCTTCAACACAATC;
TGATTGTGTTGAAGATC;
TGCTCAACAAGATGGAA;
TGTGAAGAAAAAGTCCA;
TTAAAGCCAAATCAATA;
TTGTGAAGAAAAAGTCC
14 : 8 8.660e-14 AT1G63150.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23423061-23425244 FORWARD 1 15
#2850 AAACTATTCACTTGATT;
AAGCGAATGATGATACT;
AATCTATTGAACATCGT;
ACACGATGTTCAATAGA;
AGTTACAACTTTTTTTA;
ATAATCAAGTGAATAGT;
ATATCCCATTTCTACCA;
ATATGGGATTAAAGACC;
ATATGTTTCAGTCTTAT;
ATGGTAGTTCAAGTATT;
CAAAATACACAAGTTCA;
CAAGCGAATGATGATAC;
CACGATGTTCAATAGAT;
CATAGGTCTTTAATCCC;
CGTAAAAAAAGTTGTAA;
CTGGAATACTTGAACTA;
GAATACTTGAACTACCA;
GATGGTAGTTCAAGTAT;
GGTCTTTAATCCCATAT;
GTAAAAAAAGTTGTAAC;
GTTACAACTTTTTTTAC;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATGGGATTAAAGACCT;
TATGTTTCAGTCTTATC;
TCTACCATCCGATCAAC;
TGAACTTGTGTATTTTG;
TGCATATACTCGAATAC;
TGGAATACTTGAACTAC;
TGTTGATCGGATGGTAG;
TGTTTCTACCATCCGAT;
TTCTACCATCCGATCAA;
TTGATCGGATGGTAGAA;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCAAAATACACAAGT;
TTTCTACCATCCGATCA;
TTTGAACTTGTGTATTT
18 : 31 1.477e-13 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#213 AAAGCTTCAGAAGCAGT;
AGAGGATGTCAACCAGA;
AGATCTGGTTGACATCC;
ATAGTCTCTGCAAATAT;
CAGATCTGGTTGACATC;
CATGGACTTTTTCTTCA;
CCACTGCTTCTGAAGCT;
CTTCCATCTTGTTGAGC;
GATCTGGTTGACATCCT;
TAGTCTCTGCAAATATA;
TATATTTGCAGAGACTA;
TATTGATTTGGCTTTAA;
TGATCTTCAACACAATC;
TGATTGTGTTGAAGATC;
TGCTCAACAAGATGGAA;
TGTGAAGAAAAAGTCCA;
TTAAAGCCAAATCAATA;
TTGTGAAGAAAAAGTCC
14 : 9 2.073e-13 AT1G63150.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23423061-23425244 FORWARD 1 15
#253 AAAGCTTCAGAAGCAGT;
AGAGGATGTCAACCAGA;
AGATCTGGTTGACATCC;
ATAGTCTCTGCAAATAT;
CAGATCTGGTTGACATC;
CATGGACTTTTTCTTCA;
CCACTGCTTCTGAAGCT;
CTTCCATCTTGTTGAGC;
GATCTGGTTGACATCCT;
TAGTCTCTGCAAATATA;
TATATTTGCAGAGACTA;
TATTGATTTGGCTTTAA;
TGATCTTCAACACAATC;
TGATTGTGTTGAAGATC;
TGCTCAACAAGATGGAA;
TGTGAAGAAAAAGTCCA;
TTAAAGCCAAATCAATA;
TTGTGAAGAAAAAGTCC
14 : 9 2.073e-13 AT1G63150.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23423061-23425244 FORWARD 1 15
#191 AAAGCTTCAGAAGCAGT;
AGAGGATGTCAACCAGA;
AGATCTGGTTGACATCC;
ATAGTCTCTGCAAATAT;
CAGATCTGGTTGACATC;
CCACTGCTTCTGAAGCT;
CTTCCATCTTGTTGAGC;
GATCTGGTTGACATCCT;
TAGTCTCTGCAAATATA;
TATATTTGCAGAGACTA;
TATTGATTTGGCTTTAA;
TGATCTTCAACACAATC;
TGATTGTGTTGAAGATC;
TGCTCAACAAGATGGAA;
TGTGGAAGTTGCTGTTG;
TTAAAGCCAAATCAATA;
TTGTGAAGAAAAAGTCC
14 : 10 4.668e-13 AT1G63150.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23423061-23425244 FORWARD 1 15
#214 AAAGCTTCAGAAGCAGT;
AGAGGATGTCAACCAGA;
AGATCTGGTTGACATCC;
ATAGTCTCTGCAAATAT;
CAGATCTGGTTGACATC;
CCACTGCTTCTGAAGCT;
CTTCCATCTTGTTGAGC;
GATCTGGTTGACATCCT;
TAGTCTCTGCAAATATA;
TATATTTGCAGAGACTA;
TATTGATTTGGCTTTAA;
TGATCTTCAACACAATC;
TGATTGTGTTGAAGATC;
TGCTCAACAAGATGGAA;
TGTGGAAGTTGCTGTTG;
TTAAAGCCAAATCAATA;
TTGTGAAGAAAAAGTCC
14 : 10 4.668e-13 AT1G63150.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23423061-23425244 FORWARD 1 15
#2851 AAGAGTAAGATGGATCT;
AATACTTGAACTACCAT;
AATCTATTGAACATCGT;
AGTAAGATGGATCTTGA;
AGTTACAACTTTTTTTA;
ATATCCCATTTCTACCA;
ATATGGGATTAAAGACC;
ATATGTTTACTAAAACA;
ATATGTTTCAGTCTTAT;
ATGGTAGTTCAAGTATT;
CACGATGTTCAATAGAT;
CATAGGTCTTTAATCCC;
CGTAAAAAAAGTTGTAA;
CTACCATCCGATCAACA;
CTGGAATACTTGAACTA;
GAATACTTGAACTACCA;
GATGGTAGTTCAAGTAT;
GTAAAAAAAGTTGTAAC;
GTTACAACTTTTTTTAC;
TAGGTATTCGAGTATAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATCAAGATCCATCTTA;
TATGGGATTAAAGACCT;
TATGTTTACTAAAACAA;
TATGTTTCAGTCTTATC;
TCAAGATCCATCTTACT;
TCTACCATCCGATCAAC;
TGCATATACTCGAATAC;
TGGAATACTTGAACTAC;
TGTTGATCGGATGGTAG;
TTCTACCATCCGATCAA;
TTGATCGGATGGTAGAA;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCAAAATACACAAGT;
TTTCTACCATCCGATCA
18 : 35 7.291e-13 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#2884 AATCTATTGAACATCGT;
ACACGATGTTCAATAGA;
AGTAAGATGGATCTTGA;
AGTTACAACTTTTTTTA;
ATATCCCATTTCTACCA;
ATATGGGATTAAAGACC;
ATATGTTTCAGTCTTAT;
ATGGTAGTTCAAGTATT;
ATTATCAAGATCCATCT;
CAAAATACACAAGTTCA;
CACGATGTTCAATAGAT;
CATAGGTCTTTAATCCC;
CGTAAAAAAAGTTGTAA;
CTGGAATACTTGAACTA;
GAATACTTGAACTACCA;
GATGGTAGTTCAAGTAT;
GGTCTTTAATCCCATAT;
GTAAAAAAAGTTGTAAC;
GTTACAACTTTTTTTAC;
TAAGATGGATCTTGATA;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATCAAGATCCATCTTA;
TATGGGATTAAAGACCT;
TATGTTTACTAAAACAA;
TATGTTTCAGTCTTATC;
TCAAGATCCATCTTACT;
TCTACCATCCGATCAAC;
TGAACTTGTGTATTTTG;
TGCATATACTCGAATAC;
TGGAATACTTGAACTAC;
TGTTGATCGGATGGTAG;
TGTTTCTACCATCCGAT;
TTCTACCATCCGATCAA;
TTGATCGGATGGTAGAA;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCAAAATACACAAGT;
TTTCTACCATCCGATCA
18 : 35 7.291e-13 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#256 AAAGCTTCAGAAGCAGT;
AGAGGATGTCAACCAGA;
AGATCTGGTTGACATCC;
CAGATCTGGTTGACATC;
CATGGACTTTTTCTTCA;
CCACTGCTTCTGAAGCT;
CTTCCATCTTGTTGAGC;
GATCTGGTTGACATCCT;
TATTGATTTGGCTTTAA;
TGATCTTCAACACAATC;
TGATTGTGTTGAAGATC;
TGCTCAACAAGATGGAA;
TGTGAAGAAAAAGTCCA;
TTAAAGCCAAATCAATA;
TTAGAGTTGTGAATGTA;
TTGTGAAGAAAAAGTCC
13 : 7 8.732e-13 AT1G63150.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23423061-23425244 FORWARD 1 15
#1261 AAAGGTTGTCAACCAGA;
AAGGTTGTCAACCAGAT;
AGATCTGGTTGACAACC;
AGTTGAACGGATGGTTG;
CAGATCTGGTTGACAAC;
CATCAGCCTCTATTTTC;
CCAAAGTTGTAAATGTG;
CCACAGCTTCGGAAGCT;
GGAAAATAGAGGCTGAT;
GTTACTTATGGTGCGGT;
TAGTTGAACGGATGGTT;
TGACTGTGCTGTAGATC;
TGATCTACAGCACAGTC;
TGTGTTGAAAAAGCCCA;
TTAAAGCCAAATCAGGT;
TTAGTTGAACGGATGGT;
TTCTCCATCTTGTTGAG;
TTGTGTTGAAAAAGCCC;
TTTAAAGCCAAATCAGG
13 : 7 8.732e-13 AT1G63080.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23391296-23394481 REVERSE 1 14
#1135 AAACGTGAATGATGCAC;
AAAGGTTGTCAACCAGA;
AAGGTTGTCAACCAGAT;
AGAGCTTCAGAAGCAGT;
AGATCTGGTTGACAACC;
ATATTGATTTGGCTTTG;
CAAAGCCAAATCAATAT;
CACCAGGCTCTATTTTC;
CAGATCTGGTTGACAAC;
CATGGACTTTTTCGCCA;
CCACTGCTTCTGAAGCT;
TAGTTGACCGGATGGTT;
TCAAAGCCAAATCAATA;
TGATAGTGTTGTAGATC;
TGATCTACAACACTATC;
TGTAGTTGCAAAGAGCA;
TGTGGCGAAAAAGTCCA;
TGTTCCATCTTCTTTAA;
TTAGTTGACCGGATGGT
15 : 16 1.195e-12 AT1G63130.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23416395-23418814 FORWARD 1 21
#1192 AAACGTGAATGATGCAC;
AAAGGTTGTCAACCAGA;
AAGGTTGTCAACCAGAT;
AGAGCTTCAGAAGCAGT;
AGATCTGGTTGACAACC;
ATATTGATTTGGCTTTG;
CAAAGCCAAATCAATAT;
CACCAGGCTCTATTTTC;
CAGATCTGGTTGACAAC;
CATGGACTTTTTCGCCA;
CCACTGCTTCTGAAGCT;
TAGTTGACCGGATGGTT;
TCAAAGCCAAATCAATA;
TGATAGTGTTGTAGATC;
TGATCTACAACACTATC;
TGTAGTTGCAAAGAGCA;
TGTGGCGAAAAAGTCCA;
TGTTCCATCTTCTTTAA;
TTAGTTGACCGGATGGT
15 : 16 1.195e-12 AT1G63130.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23416395-23418814 FORWARD 1 21
#2848 AAGAGTAAGATGGATCT;
AATACTTGAACTACCAT;
AATCTATTGAACATCGT;
ACACGATGTTCAATAGA;
AGTAAGATGGATCTTGA;
AGTTACAACTTTTTTTA;
ATATCCCATTTCTACCA;
ATATGGGATTAAAGACC;
ATATGTTTCAGTCTTAT;
ATGGTAGTTCAAGTATT;
CAAAATACACAAGTTCA;
CACGATGTTCAATAGAT;
CATAGGTCTTTAATCCC;
CGTAAAAAAAGTTGTAA;
CTACCATCCGATCAACA;
GAATACTTGAACTACCA;
GATGGTAGTTCAAGTAT;
GTAAAAAAAGTTGTAAC;
GTTACAACTTTTTTTAC;
TACCATCCGATCAACAA;
TAGGTATTCGAGTATAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATCAAGATCCATCTTA;
TATGGGATTAAAGACCT;
TCAAGATCCATCTTACT;
TCTACCATCCGATCAAC;
TGAACTTGTGTATTTTG;
TGCATATACTCGAATAC;
TGGAATACTTGAACTAC;
TGTTGATCGGATGGTAG;
TTCTACCATCCGATCAA;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGAACTTGTGTATTT
18 : 38 2.189e-12 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#2898 AAGAGTAAGATGGATCT;
AATACTTGAACTACCAT;
AATCTATTGAACATCGT;
ACACGATGTTCAATAGA;
AGTAAGATGGATCTTGA;
AGTTACAACTTTTTTTA;
ATATCCCATTTCTACCA;
ATATGGGATTAAAGACC;
ATATGTTTCAGTCTTAT;
ATGGTAGTTCAAGTATT;
CAAAATACACAAGTTCA;
CACGATGTTCAATAGAT;
CATAGGTCTTTAATCCC;
CGTAAAAAAAGTTGTAA;
CTACCATCCGATCAACA;
GAATACTTGAACTACCA;
GATGGTAGTTCAAGTAT;
GTAAAAAAAGTTGTAAC;
GTTACAACTTTTTTTAC;
TACCATCCGATCAACAA;
TAGGTATTCGAGTATAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATCAAGATCCATCTTA;
TATGGGATTAAAGACCT;
TCAAGATCCATCTTACT;
TCTACCATCCGATCAAC;
TGAACTTGTGTATTTTG;
TGCATATACTCGAATAC;
TGGAATACTTGAACTAC;
TGTTGATCGGATGGTAG;
TTCTACCATCCGATCAA;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGAACTTGTGTATTT
18 : 38 2.189e-12 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#2856 AAACTATTCACTTGATT;
AATACTTGAACTACCAT;
AATCTATTGAACATCGT;
ACAACTTTTTTTACGGG;
ACACGATGTTCAATAGA;
AGTTACAACTTTTTTTA;
ATAATCAAGTGAATAGT;
ATATCCCATTTCTACCA;
ATGGTAGTTCAAGTATT;
CAAAATACACAAGTTCA;
CACGATGTTCAATAGAT;
CATAGGTCTTTAATCCC;
CGTAAAAAAAGTTGTAA;
CTACCATCCGATCAACA;
CTCCAAGCGAATGATGA;
GAATACTTGAACTACCA;
GATGGTAGTTCAAGTAT;
GTTACAACTTTTTTTAC;
TACCATCCGATCAACAA;
TAGGTATTCGAGTATAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATGGGATTAAAGACCT;
TCCAAGCGAATGATGAT;
TCTACCATCCGATCAAC;
TGTTGATCGGATGGTAG;
TTCTACCATCCGATCAA;
TTGTTGATCGGATGGTA;
TTTGAACTTGTGTATTT
18 : 39 3.107e-12 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 0 11
#1262 AAAGGTTGTCAACCAGA;
AAGGTTGTCAACCAGAT;
AGATCTGGTTGACAACC;
AGTTGAACGGATGGTTG;
ATAGTCTCTGCAAATAT;
ATGACTGTGCTGTAGAT;
CAGATCTGGTTGACAAC;
CATCAGCCTCTATTTTC;
CCACAGCTTCGGAAGCT;
GGAAAATAGAGGCTGAT;
GTTACTTATGGTGCGGT;
TAGTCTCTGCAAATATA;
TAGTTGAACGGATGGTT;
TATATTTGCAGAGACTA;
TATGACTGTGCTGTAGA;
TGACTGTGCTGTAGATC;
TGATCTACAGCACAGTC;
TTAAAGCCAAATCAGGT;
TTAGTTGAACGGATGGT;
TTCTCCATCTTGTTGAG;
TTGTGTTGAAAAAGCCC;
TTTAAAGCCAAATCAGG
14 : 13 3.982e-12 AT1G63080.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23391296-23394481 REVERSE 1 14
#1318 AAAGGTTGTCAACCAGA;
AAGGTTGTCAACCAGAT;
AGATCTGGTTGACAACC;
AGTTGAACGGATGGTTG;
ATAGTCTCTGCAAATAT;
ATGACTGTGCTGTAGAT;
CAGATCTGGTTGACAAC;
CATCAGCCTCTATTTTC;
CCACAGCTTCGGAAGCT;
GGAAAATAGAGGCTGAT;
GTTACTTATGGTGCGGT;
TAGTCTCTGCAAATATA;
TAGTTGAACGGATGGTT;
TATATTTGCAGAGACTA;
TATGACTGTGCTGTAGA;
TGACTGTGCTGTAGATC;
TGATCTACAGCACAGTC;
TGTGTTGAAAAAGCCCA;
TTAAAGCCAAATCAGGT;
TTAGTTGAACGGATGGT;
TTCTCCATCTTGTTGAG;
TTGTGTTGAAAAAGCCC;
TTTAAAGCCAAATCAGG
14 : 13 3.982e-12 AT1G63080.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23391296-23394481 REVERSE 1 14
#1326 AAAGGTTGTCAACCAGA;
AAGGTTGTCAACCAGAT;
AGATCTGGTTGACAACC;
AGTTGAACGGATGGTTG;
ATAGTCTCTGCAAATAT;
ATGACTGTGCTGTAGAT;
CAGATCTGGTTGACAAC;
CATCAGCCTCTATTTTC;
CCACAGCTTCGGAAGCT;
GGAAAATAGAGGCTGAT;
GTTACTTATGGTGCGGT;
TAGTCTCTGCAAATATA;
TAGTTGAACGGATGGTT;
TATATTTGCAGAGACTA;
TATGACTGTGCTGTAGA;
TGACTGTGCTGTAGATC;
TGATCTACAGCACAGTC;
TGTGTTGAAAAAGCCCA;
TTAAAGCCAAATCAGGT;
TTAGTTGAACGGATGGT;
TTCTCCATCTTGTTGAG;
TTGTGTTGAAAAAGCCC;
TTTAAAGCCAAATCAGG
14 : 13 3.982e-12 AT1G63080.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23391296-23394481 REVERSE 1 14
#861 AACATCTGGTCTAATAC;
ACATCTGGTCTAATACC;
ACTCAGTGATATGATTG;
AGATGGAGTGATGCTTC;
AGCTTGTAGAGGCTGAG;
AGGAAAATCAATCCAAA;
ATGGAGTGATGCTTCTC;
CATATGGATGATGCACT;
CATCTGGTCTAATACCT;
CGAGAAGCATCACTCCA;
CGTAATTACAAAGGCAA;
CTACTCAGTGATATGAT;
CTTCCTTCACAAATGCA;
GATGGAGTGATGCTTCT;
GTATTAGACCAGATGTT;
GTTATCCATTTCAGTGA;
GTTCACTGAAATGGATA;
TACTCAGTGATATGATT;
TATCCATTTCAGTGAAC;
TCAATCAATGCGCTGAA;
TGTATTTGCAAAGACCA;
TTATCCATTTCAGTGAA;
TTTGTATTTGCAAAGAC
14 : 14 7.518e-12 AT1G62910.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23302722-23306827 FORWARD 0 28
#1246 AAAGGTTGTCAACCAGA;
AAGGTTGTCAACCAGAT;
AGATCTGGTTGACAACC;
AGTTGAACGGATGGTTG;
ATAGTCTCTGCAAATAT;
ATGACTGTGCTGTAGAT;
CAGATCTGGTTGACAAC;
CATCAGCCTCTATTTTC;
GGAAAATAGAGGCTGAT;
GTTACTTATGGTGCGGT;
GTTATCCATTTCAGTGA;
GTTCACTGAAATGGATA;
TAGTCTCTGCAAATATA;
TATATTTGCAGAGACTA;
TATCCATTTCAGTGAAC;
TATGACTGTGCTGTAGA;
TCTATGACTGTGCTGTA;
TGACTGTGCTGTAGATC;
TGATCTACAGCACAGTC;
TTAAAGCCAAATCAGGT;
TTATCCATTTCAGTGAA;
TTCTCCATCTTGTTGAG;
TTTAAAGCCAAATCAGG
14 : 16 2.437e-11 AT1G63080.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23391296-23394481 REVERSE 0 14
#2914 AATGACTCATTCGCTTG;
ACGATATCTTCCATTTC;
ATATTCTAGGATATGCA;
ATCCTTGAATATGTTCA;
ATGATATTTGTAGTAAT;
ATTCTAAGTCCAACATA;
ATTGGATCTTAGGAAAT;
ATTTCCTAAGATCCAAT;
ATTTTCTAAGATCTTAT;
CAATGCTTTTTCTAGTT;
CGCTATGTTGGACTTAG;
CGCTATGTTGGACTTAG;
CTAAGTCCAACATAGCG;
CTAAGTCCAACATAGCG;
CTATGTTGGACTTAGAA;
CTATGTTGGACTTAGGA;
GAGAAATGGAAGATATC;
GCTATGTTGGACTTAGA;
TACAAGCGAATGAGTCA;
TACGCTATGTTGGACTT;
TATCCTTGAATATGTTC;
TATTCTAGGATATGCAA;
TCCAATGCTTTTTCTAG;
TCTAAGTCCAACATAGC;
TGATTGGATCTTAGGAA;
TTCTAAGTCCAACATAG;
TTTTAAGTCTAACATAG
16 : 29 3.057e-11 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#2942 AAGTCCAACATAGCGTA;
AAGTCTAACATAGCGTT;
ACGATATCTTCCATTTC;
ATAATTTCCTAAGATCC;
ATATTCTAGGATATGCA;
ATCCTTGAATATGTTCA;
ATGATATTTGTAGTAAT;
ATTGGATCTTAGGAAAT;
ATTTCCTAAGATCCAAT;
ATTTTCTAAGATCTTAT;
CGCTATGTTGGACTTAG;
CGCTATGTTGGACTTAG;
CTAAGTCCAACATAGCG;
CTAAGTCCAACATAGCG;
CTACGCTATGTTGGACT;
GAACGCTATGTTGGACT;
GAGAAATGGAAGATATC;
TACGCTATGTTGGACTT;
TATCCAATGCTTTTTCT;
TATCCTTGAATATGTTC;
TATTCTAGGATATGCAA;
TCCAATGCTTTTTCTAG;
TCTAAGTCCAACATAGC;
TGAACAGTTGATGATAC;
TGATTGGATCTTAGGAA;
TGTGAACATATTCAAGG;
TTCTAAGTCCAACATAG;
TTTTAAGTCTAACATAG
16 : 29 3.057e-11 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#2960 AATGACTCATTCGCTTG;
ACGATATCTTCCATTTC;
ATATTCTAGGATATGCA;
ATCCTTGAATATGTTCA;
ATGATATTTGTAGTAAT;
ATTCTAAGTCCAACATA;
ATTGGATCTTAGGAAAT;
ATTTCCTAAGATCCAAT;
ATTTTCTAAGATCTTAT;
CAATGCTTTTTCTAGTT;
CGCTATGTTGGACTTAG;
CGCTATGTTGGACTTAG;
CTAAGTCCAACATAGCG;
CTAAGTCCAACATAGCG;
CTATGTTGGACTTAGAA;
CTATGTTGGACTTAGGA;
GAGAAATGGAAGATATC;
GCTATGTTGGACTTAGA;
TACAAGCGAATGAGTCA;
TACGCTATGTTGGACTT;
TATCCTTGAATATGTTC;
TATTCTAGGATATGCAA;
TCCAATGCTTTTTCTAG;
TCTAAGTCCAACATAGC;
TGATTGGATCTTAGGAA;
TTCTAAGTCCAACATAG;
TTTTAAGTCTAACATAG
16 : 29 3.057e-11 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#1294 AAAGGTTGTCAACCAGA;
AAGGTTGTCAACCAGAT;
AGATCTGGTTGACAACC;
AGTTGAACGGATGGTTG;
ATAGTCTCTGCAAATAT;
ATGACTGTGCTGTAGAT;
CAGATCTGGTTGACAAC;
CATCAGCCTCTATTTTC;
GGAAAATAGAGGCTGAT;
GTTACTTATGGTGCGGT;
GTTCACTGAAATGGATA;
TAGTCTCTGCAAATATA;
TAGTTGAACGGATGGTT;
TATATTTGCAGAGACTA;
TATCCATTTCAGTGAAC;
TATGACTGTGCTGTAGA;
TGACTGTGCTGTAGATC;
TGATCTACAGCACAGTC;
TTAAAGCCAAATCAGGT;
TTATCCATTTCAGTGAA;
TTCTCCATCTTGTTGAG;
TTTAAAGCCAAATCAGG
14 : 17 4.209e-11 AT1G63080.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23391296-23394481 REVERSE 1 14
#1320 AAAGGTTGTCAACCAGA;
AAGGTTGTCAACCAGAT;
AGATCTGGTTGACAACC;
AGTTGAACGGATGGTTG;
ATAGTCTCTGCAAATAT;
ATGACTGTGCTGTAGAT;
CAGATCTGGTTGACAAC;
CATCAGCCTCTATTTTC;
GGAAAATAGAGGCTGAT;
GTTACTTATGGTGCGGT;
GTTCACTGAAATGGATA;
TAGTCTCTGCAAATATA;
TAGTTGAACGGATGGTT;
TATATTTGCAGAGACTA;
TATCCATTTCAGTGAAC;
TATGACTGTGCTGTAGA;
TGACTGTGCTGTAGATC;
TGATCTACAGCACAGTC;
TTAAAGCCAAATCAGGT;
TTAGTTGAACGGATGGT;
TTCTCCATCTTGTTGAG;
TTTAAAGCCAAATCAGG
14 : 17 4.209e-11 AT1G63080.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23391296-23394481 REVERSE 1 14
#1258 AACATCTGGTCTAATAC;
ACATCTGGTCTAATACC;
AGATCTGGTTGACAACC;
ATAGTCTCTGCAAATAT;
ATGACTGTGCTGTAGAT;
CAGATCTGGTTGACAAC;
CATCAGCCTCTATTTTC;
CATCTGGTCTAATACCT;
GGAAAATAGAGGCTGAT;
GTATTAGACCAGATGTT;
GTTACTTATGGTGCGGT;
GTTATCCATTTCAGTGA;
GTTCACTGAAATGGATA;
TAGTCTCTGCAAATATA;
TATATTTGCAGAGACTA;
TATCCATTTCAGTGAAC;
TATGACTGTGCTGTAGA;
TCTATGACTGTGCTGTA;
TGACTGTGCTGTAGATC;
TGATCTACAGCACAGTC;
TTAAAGCCAAATCAGGT;
TTATCCATTTCAGTGAA;
TTCTCCATCTTGTTGAG;
TTTAAAGCCAAATCAGG
14 : 17 4.209e-11 AT1G63080.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23391296-23394481 REVERSE 0 14
#2931 AACAGTTGATGATACAA;
AAGTCCAACATAGCGTA;
ACGATATCTTCCATTTC;
ATAATTTCCTAAGATCC;
ATATTCTAGGATATGCA;
ATCCTTGAATATGTTCA;
ATGATATTTGTAGTAAT;
ATTGGATCTTAGGAAAT;
ATTGTATCATCAACTGT;
ATTTCCTAAGATCCAAT;
CGCTATGTTGGACTTAG;
CGTGTAACCAAAACATA;
CTAAGTCCAACATAGCG;
CTACGCTATGTTGGACT;
GAGAAATGGAAGATATC;
GTGTAACCAAAACATAT;
TACGCTATGTTGGACTT;
TATCCAATGCTTTTTCT;
TATCCTTGAATATGTTC;
TATTCTAGGATATGCAA;
TCCAATGCTTTTTCTAG;
TCTAAGTCCAACATAGC;
TGAACAGTTGATGATAC;
TGTAACCAAAACATATT;
TGTGAACATATTCAAGG;
TTCTAAGTCCAACATAG;
TTCTTTAAAATTGTTTC;
TTGTATCATCAACTGTT
15 : 23 4.390e-11 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
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Session Summary        
Users Input
Number of small RNAs submitted by user 11767,   download original FASTA file
Number of valid small RNAs after pre-processing 11767,   download processed FASTA file and LOG file
transcript/genomic library chosen by user Arabidopsis thaliana TAIR7, cDNA, released 04/25/2007
Number of phase-initiators submitted by user 217,   download original FASTA file
Number of valid phase-initiator sequences after pre-processing 166,   download processed FASTA file and LOG file
Mapping small RNAs onto transcript/genomic sequences
Number of total hits during mapping 6615
Number of small RNAs having hits 3806
Number of transcript/genomic sequences having hits 1796
Clustering phased small RNAs
Number of all phased small RNA clusters (having at least 2 phased small RNAs) 3151
Number of transcript/genomic sequences associated with the phased small RNA clusters 160
Identifying cleavage site
Number of phased small RNA clusters with valid cleavage sites directed by phase-initiators 600