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List view: phased small RNA clusters [#Session ID: 1208272946334827]

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Cluster ID Phased small RNA(s) # of hit position
[phased:non-phased]
P-value Matched transcript Transcript description # of cleavage sites guided by input phase-initiator # of complementary regions
#3163 AAAAATTGGGAGATATC;
AACAAGCGAATGAGTCA;
AATGACTCATTCGCTTG;
AATGGGAGATGTCCGGA;
ATTCCGGACATCTCCCA;
CGCTATGTTGGACTTAG;
TCGGTATCTAACCATTC;
TTCCGGACATCTCCCAT;
TTCTAAGTCCAACATAG;
TTCTAAGTCCAACATAG
9 : 2 9.149e-10 AT1G50055.1 | Symbols: TAS1B | TAS1B; other RNA | chr1:18552872-18553710 REVERSE 1 9
#3164 AAAAATTGGGAGATATC;
AACAAGCGAATGAGTCA;
AATGACTCATTCGCTTG;
AATGGGAGATGTCCGGA;
ATTCCGGACATCTCCCA;
CGCTATGTTGGACTTAG;
TCGGTATCTAACCATTC;
TTCCGGACATCTCCCAT;
TTCTAAGTCCAACATAG;
TTCTAAGTCCAACATAG
9 : 2 9.149e-10 AT1G50055.1 | Symbols: TAS1B | TAS1B; other RNA | chr1:18552872-18553710 REVERSE 1 9
#2992 AAAGGTTGTCAACCAGA;
AAGGTTGTCAACCAGAT;
AGATCTGGTTGACAACC;
AGGGAAAATAGAGGCTG;
CAGATCTGGTTGACAAC;
CATCAGCCTCTATTTTC;
CCAAAGTTGTAAATGTG;
GGAAAATAGAGGCTGAT;
TGACTGTGCTGTAGATC;
TTAAAGCCAAATCAGGT;
TTAGTTGAACGGATGGT;
TTTAAAGCCAAATCAGG
8 : 1 4.429e-9 AT1G63080.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23391296-23394481 REVERSE 1 14
#3000 AAAGGTTGTCAACCAGA;
AAGGTTGTCAACCAGAT;
AGATCTGGTTGACAACC;
AGGGAAAATAGAGGCTG;
CAGATCTGGTTGACAAC;
CATCAGCCTCTATTTTC;
GGAAAATAGAGGCTGAT;
TGACTGTGCTGTAGATC;
TTAAAGCCAAATCAGGT;
TTAGTTGAACGGATGGT;
TTTAAAGCCAAATCAGG
7 : 1 9.571e-8 AT1G63080.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23391296-23394481 REVERSE 1 14
#3009 AAAGGTTGTCAACCAGA;
AAGGTTGTCAACCAGAT;
AGATCTGGTTGACAACC;
AGGGAAAATAGAGGCTG;
CAGATCTGGTTGACAAC;
CATCAGCCTCTATTTTC;
CCAAAGTTGTAAATGTG;
GGAAAATAGAGGCTGAT;
TTAAAGCCAAATCAGGT;
TTAGTTGAACGGATGGT;
TTTAAAGCCAAATCAGG
7 : 1 9.571e-8 AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23388989-23390832 REVERSE 1 13
#8049 AAATGACTATCACCCTC;
AGAACACCAGAGCAATG;
AGCAAGTTCCCAATACT;
AGCGTAGACCAACTCCG;
AGGGGTGAGTTTCTTCG;
AGTCTTCGTTGCTATCC;
ATGACATTGCTCTGGTG;
ATGCGAAGAAACTCACC;
CAAATGACTATCACCCT;
CAGAGGGTGATAGTCAT;
CAGTATTGGGAACTTGC;
CGTAGACCAACTCCGCC;
CGTTGTCATTTTAGGGA;
GAGAACACCAGAGCAAT;
GGCTTTATCAGTGACTA;
GGGGCGGAGTTGGTCTA;
GTAGACCAACTCCGCCC;
GTGAGTTTCTTCGCATA;
TGACATTGCTCTGGTGT
13 : 30 1.101e-7 AT3G21170.1 | Symbols: | F-box family protein | chr3:7419982-7421166 FORWARD 0 2
#8093 AAATGACTATCACCCTC;
AGAACACCAGAGCAATG;
AGCAAGTTCCCAATACT;
AGCGTAGACCAACTCCG;
AGGGGTGAGTTTCTTCG;
AGTCTTCGTTGCTATCC;
ATGACATTGCTCTGGTG;
ATGCGAAGAAACTCACC;
CAAATGACTATCACCCT;
CAGAGGGTGATAGTCAT;
CAGTATTGGGAACTTGC;
CGTAGACCAACTCCGCC;
CGTTGTCATTTTAGGGA;
GAGAACACCAGAGCAAT;
GGCTTTATCAGTGACTA;
GGGGCGGAGTTGGTCTA;
GTAGACCAACTCCGCCC;
GTGAGTTTCTTCGCATA;
TGACATTGCTCTGGTGT
13 : 30 1.101e-7 AT3G21170.1 | Symbols: | F-box family protein | chr3:7419982-7421166 FORWARD 0 2
#1884 AAGTAGCAAGCGATGAG;
AATCTCCACCTTGTGGT;
ACTCCGATGATCCTCAC;
AGAACCGCCGTGATGAC;
AGGCTCATCGCTTGCTA;
ATAAACCGTCAGCTGCA;
CATCACGGCGGTTCTGA;
CATGCAGCTGACGGTTT;
CATGGGTGTGGATGACT;
CCATGGCCTTCAACACG;
GAAGCTACGGTTATCCC;
GCAGCTGACGGTTTATG;
GTCATCCACACCCATGC;
TAAACCGTCAGCTGCAT;
TGCTTCTCGTGTTGCTC;
TTTTGCTCCTTTGTCGC
14 : 41 2.287e-7 AT1G49260.1 | Symbols: | similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G14810.1); similar to MscS Mechanosensitive ion channel [Medicago truncatula] (GB:ABE89426.1) | chr1:18229538-18230635 FORWARD 0 3
#3173 AAAAATTGGGAGATATC;
AATGGGAGATGTCCGGA;
ATTCCGGACATCTCCCA;
CGCTATGTTGGACTTAG;
TTCCGGACATCTCCCAT;
TTCTAAGTCCAACATAG;
TTCTAAGTCCAACATAG
6 : 0 3.293e-7 AT1G50055.1 | Symbols: TAS1B | TAS1B; other RNA | chr1:18552872-18553710 REVERSE 1 9
#3170 AAAAATTGGGAGATATC;
AATGGGAGATGTCCGGA;
ATTCCGGACATCTCCCA;
CGCTATGTTGGACTTAG;
TCGGTATCTAACCATTC;
TTCCGGACATCTCCCAT;
TTCTAAGTCCAACATAG;
TTCTAAGTCCAACATAG
7 : 2 3.695e-7 AT1G50055.1 | Symbols: TAS1B | TAS1B; other RNA | chr1:18552872-18553710 REVERSE 1 9
#11609 ACCGGAACTCTTGGCCG;
AGAAAAAGCCTCTGACG;
AGAGAAAAAGCCTCTGA;
AGCTTGATCTTTGTGTT;
AGCTTTGGGATGGAGAA;
ATCTCTGGAACTTTGAG;
ATGCGCTGCTCGGAGAG;
CAGCGTCAGAGGCTTTT;
CAGCTTTGGGATGGAGA;
CATCTCTGGAACTTTGA;
CCTCAGCTTTGGGATGG;
CTAAGCTTGATCTTTGT;
CTATGCGCTGCTCGGAG;
CTCAAAGTTCCAGAGAT;
CTCAGCTTTGGGATGGA;
CTCCGAGCAGCGCATAG;
CTCTATGCGCTGCTCGG;
CTCTCCGAGCAGCGCAT;
CTTCTTCAAGACTCTTT;
GAAAGATCAAACATCAG;
GAATTCTGTTATGATCT;
GAGGTGATGTTGAATGG;
GCAAATCCATATTGGCA;
GCCAATATGGATTTGCT;
GCTCTCCGAGCAGCGCA;
GGAGAGGTGATGTTGAA;
GTCCTCAAAGTTCCAGA;
TCAAAGTTCCAGAGATG;
TCTATGCGCTGCTCGGA;
TCTCCATCCCAAAGCTG;
TGAGAAAGATCAAACAT;
TGCCAATATGGATTTGC;
TGCTGATGTTTGATCTT;
TGGAGAGGTGATGTTGA;
TTCTCCATCCCAAAGCT
17 : 82 1.001e-6 AT4G27930.1 | Symbols: | unknown protein | chr4:13902641-13902984 REVERSE 0 0
#1952 AAAGCCGAGAGCCGTGT;
AACAGGCCTCGGTATCC;
AAGCCGAGAGCCGTGTG;
AAGCCGTCACTACAACG;
AAGTGATCTTCATTGTT;
AATCCGATTTCCTCCTT;
ACACGGCTCTCGGCTTT;
ACGGTTATCCCGCATGT;
AGCCGAGAGCCGTGTGG;
AGTGATCTTCATTGTTG;
ATCCGATTTCCTCCTTT;
CAACAATGAAGATCACT;
CACACGGCTCTCGGCTT;
CCACACGGCTCTCGGCT;
CCATATGGGAATTGGCA;
CGGCGTAAGACCTTGTG;
CGTTGTAGTGACGGCTT;
CTGACATGCGGGATAAC;
GAAAGCCGAGAGCCGTG;
GAACAGGCCTCGGTATC;
GATACCGAGGCCTGTTC;
GATTCTTGTGATCGCTT;
GCAAGCGATGAGCCTCG;
GGATACCGAGGCCTGTT;
GGTGGATACCGAGGCCT;
GTTGTAGTGACGGCTTG;
TACGGTTATCCCGCATG;
TCGAGGCTCATCGCTTG;
TGACATGCGGGATAACC;
TGATCTTCATTGTTGGC;
TGGATACCGAGGCCTGT
16 : 71 1.364e-6 AT1G49260.1 | Symbols: | similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G14810.1); similar to MscS Mechanosensitive ion channel [Medicago truncatula] (GB:ABE89426.1) | chr1:18229538-18230635 FORWARD 0 3
#1972 AAAGCCGAGAGCCGTGT;
AACAGGCCTCGGTATCC;
AAGCCGAGAGCCGTGTG;
AAGCCGTCACTACAACG;
AAGTGATCTTCATTGTT;
AATCCGATTTCCTCCTT;
ACACGGCTCTCGGCTTT;
ACGGTTATCCCGCATGT;
ACTGACATGCGGGATAA;
AGCGATCACAAGAATCC;
AGCGATGAGCCTCGAAG;
AGTGATCTTCATTGTTG;
ATACCGAGGCCTGTTCC;
ATCCGATTTCCTCCTTT;
CAACAATGAAGATCACT;
CACACGGCTCTCGGCTT;
CCACACGGCTCTCGGCT;
CGGCGTAAGACCTTGTG;
CGTTGTAGTGACGGCTT;
CTGACATGCGGGATAAC;
GAAAGCCGAGAGCCGTG;
GAACAGGCCTCGGTATC;
GATACCGAGGCCTGTTC;
GATTCTTGTGATCGCTT;
GGAACAGGCCTCGGTAT;
GGATACCGAGGCCTGTT;
GTTGTAGTGACGGCTTG;
TACGGTTATCCCGCATG;
TCGAGGCTCATCGCTTG;
TGACATGCGGGATAACC;
TGGATACCGAGGCCTGT
16 : 71 1.364e-6 AT1G49260.1 | Symbols: | similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G14810.1); similar to MscS Mechanosensitive ion channel [Medicago truncatula] (GB:ABE89426.1) | chr1:18229538-18230635 FORWARD 0 3
#1974 AAAGCCGAGAGCCGTGT;
AACAGGCCTCGGTATCC;
AAGCCGAGAGCCGTGTG;
AAGCCGTCACTACAACG;
AAGTGATCTTCATTGTT;
AATCCGATTTCCTCCTT;
ACACGGCTCTCGGCTTT;
ACGGTTATCCCGCATGT;
ACTGACATGCGGGATAA;
AGCGATCACAAGAATCC;
AGCGATGAGCCTCGAAG;
AGTGATCTTCATTGTTG;
ATACCGAGGCCTGTTCC;
ATCCGATTTCCTCCTTT;
CAACAATGAAGATCACT;
CACACGGCTCTCGGCTT;
CCACACGGCTCTCGGCT;
CGGCGTAAGACCTTGTG;
CGTTGTAGTGACGGCTT;
CTGACATGCGGGATAAC;
GAAAGCCGAGAGCCGTG;
GAACAGGCCTCGGTATC;
GATACCGAGGCCTGTTC;
GATTCTTGTGATCGCTT;
GGAACAGGCCTCGGTAT;
GGATACCGAGGCCTGTT;
GTTGTAGTGACGGCTTG;
TACGGTTATCCCGCATG;
TCGAGGCTCATCGCTTG;
TGACATGCGGGATAACC;
TGGATACCGAGGCCTGT
16 : 71 1.364e-6 AT1G49260.1 | Symbols: | similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G14810.1); similar to MscS Mechanosensitive ion channel [Medicago truncatula] (GB:ABE89426.1) | chr1:18229538-18230635 FORWARD 0 3
#2018 AAAGCCGAGAGCCGTGT;
AACAGGCCTCGGTATCC;
AAGCCGAGAGCCGTGTG;
AAGCCGTCACTACAACG;
AAGTGATCTTCATTGTT;
AATCCGATTTCCTCCTT;
ACACGGCTCTCGGCTTT;
ACGGTTATCCCGCATGT;
AGCCGAGAGCCGTGTGG;
AGTGATCTTCATTGTTG;
ATCCGATTTCCTCCTTT;
CAACAATGAAGATCACT;
CACACGGCTCTCGGCTT;
CCACACGGCTCTCGGCT;
CCATATGGGAATTGGCA;
CGGCGTAAGACCTTGTG;
CGTTGTAGTGACGGCTT;
CTGACATGCGGGATAAC;
GAAAGCCGAGAGCCGTG;
GAACAGGCCTCGGTATC;
GATACCGAGGCCTGTTC;
GATTCTTGTGATCGCTT;
GCAAGCGATGAGCCTCG;
GGATACCGAGGCCTGTT;
GGTGGATACCGAGGCCT;
GTTGTAGTGACGGCTTG;
TACGGTTATCCCGCATG;
TCGAGGCTCATCGCTTG;
TGACATGCGGGATAACC;
TGATCTTCATTGTTGGC;
TGGATACCGAGGCCTGT
16 : 71 1.364e-6 AT1G49260.1 | Symbols: | similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G14810.1); similar to MscS Mechanosensitive ion channel [Medicago truncatula] (GB:ABE89426.1) | chr1:18229538-18230635 FORWARD 0 3
#84 AACCGACGGACTGGCAG;
AATCCTGCCAGTCCGTC;
AATTCCCATTAGTCGCT;
ACCGCTGTCCACCGCCA;
AGTCGGCAGGATTTCCT;
ATCAAGGAAATCCTGCC;
CGACGGACTGGCAGGAT;
GATAAGGACTGTAACCA;
TCAAGCGACTAATGGGA;
TCCCATTAGTCGCTTGA;
TTAGAGAGGATCTCCGA;
TTGATAACCACCGGAGT
10 : 17 1.425e-6 AT1G44085.1 | Symbols: | glycine-rich protein | chr1:16760550-16760948 REVERSE 0 0
#1846 AAGCCGAGAGCCGTGTG;
AAGTGATCTTCATTGTT;
ACGGTTATCCCGCATGT;
ACTCCGATGATCCTCAC;
AGCAAGCGATGAGCCTC;
AGCCGAGAGCCGTGTGG;
AGTGATCTTCATTGTTG;
ATCCATGCAGCTGACGG;
CACACGGCTCTCGGCTT;
CATATGGGAATTGGCAC;
CCACACGGCTCTCGGCT;
CCATATGGGAATTGGCA;
CGTTGTAGTGACGGCTT;
GAGGCTCATCGCTTGCT;
GATTCTTGTGATCGCTT;
GCAAGCGATGAGCCTCG;
GTTGTAGTGACGGCTTG;
TAAGACCTTGTGGAGCT;
TACGGTTATCCCGCATG;
TCGAAATCCGATTTCCT;
TCGAGGCTCATCGCTTG;
TCTTGTGATCGCTTTGG;
TGACATGCGGGATAACC;
TGATCTTCATTGTTGGC;
TTCCAAAGCGATCACAA
15 : 60 1.549e-6 AT1G49260.1 | Symbols: | similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G14810.1); similar to MscS Mechanosensitive ion channel [Medicago truncatula] (GB:ABE89426.1) | chr1:18229538-18230635 FORWARD 0 3
#1976 AAGTAGCAAGCGATGAG;
ACCTTGTGGAGCTTTCC;
AGACCTTGTGGAGCTTT;
AGGCTCATCGCTTGCTA;
AGTGACGGCTTGTGCGG;
ATCTCAAGTTTTCGGCG;
ATCTTCATTGTTGGCGC;
CATATGGGAATTGGCAC;
CATCTCAAGTTTTCGGC;
CCTTTGGTGGATACCGA;
CTCATCGCTTGCTACTT;
CTTTGGTGGATACCGAG;
GAAGCTACGGTTATCCC;
GAATCCACCACACGGCT;
GAGGCTCATCGCTTGCT;
GCTTTCGAAATCCGATT;
GGCCTCGGTATCCACCA;
GTAGTGACGGCTTGTGC;
GTGACGGCTTGTGCGGC;
TAAGACCTTGTGGAGCT;
TCGAAATCCGATTTCCT;
TCTTGTGATCGCTTTGG;
TGCCGCACAAGCCGTCA;
TGGGAAAGCTCCACAAG;
TGGTGGATACCGAGGCC;
TTCCAAAGCGATCACAA;
TTCGAAATCCGATTTCC;
TTTCGAAATCCGATTTC;
TTTGGTGGATACCGAGG
16 : 72 1.616e-6 AT1G49260.1 | Symbols: | similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G14810.1); similar to MscS Mechanosensitive ion channel [Medicago truncatula] (GB:ABE89426.1) | chr1:18229538-18230635 FORWARD 0 3
#2035 AAGTAGCAAGCGATGAG;
ACCTTGTGGAGCTTTCC;
AGACCTTGTGGAGCTTT;
AGGCTCATCGCTTGCTA;
AGTGACGGCTTGTGCGG;
ATCTCAAGTTTTCGGCG;
ATCTTCATTGTTGGCGC;
CATATGGGAATTGGCAC;
CATCTCAAGTTTTCGGC;
CCTTTGGTGGATACCGA;
CTCATCGCTTGCTACTT;
CTTTGGTGGATACCGAG;
GAAGCTACGGTTATCCC;
GAATCCACCACACGGCT;
GAGGCTCATCGCTTGCT;
GCTTTCGAAATCCGATT;
GGCCTCGGTATCCACCA;
GTAGTGACGGCTTGTGC;
GTGACGGCTTGTGCGGC;
TAAGACCTTGTGGAGCT;
TCGAAATCCGATTTCCT;
TCTTGTGATCGCTTTGG;
TGCCGCACAAGCCGTCA;
TGGGAAAGCTCCACAAG;
TGGTGGATACCGAGGCC;
TTCCAAAGCGATCACAA;
TTCGAAATCCGATTTCC;
TTTCGAAATCCGATTTC;
TTTGGTGGATACCGAGG
16 : 72 1.616e-6 AT1G49260.1 | Symbols: | similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G14810.1); similar to MscS Mechanosensitive ion channel [Medicago truncatula] (GB:ABE89426.1) | chr1:18229538-18230635 FORWARD 0 3
#3014 AAAGGTTGTCAACCAGA;
AAGGTTGTCAACCAGAT;
AGATCTGGTTGACAACC;
AGGGAAAATAGAGGCTG;
CAGATCTGGTTGACAAC;
CATCAGCCTCTATTTTC;
GGAAAATAGAGGCTGAT;
TTAAAGCCAAATCAGGT;
TTAGTTGAACGGATGGT;
TTTAAAGCCAAATCAGG
6 : 1 1.905e-6 AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23388989-23390832 REVERSE 1 13
#1881 AAAGCCGAGAGCCGTGT;
AAGCCGTCACTACAACG;
AAGTGATCTTCATTGTT;
AATCCGATTTCCTCCTT;
ACACGGCTCTCGGCTTT;
ACGGTTATCCCGCATGT;
ACTGACATGCGGGATAA;
AGCGATCACAAGAATCC;
AGCGATGAGCCTCGAAG;
AGGAACAGGCCTCGGTA;
AGTGATCTTCATTGTTG;
ATACCGAGGCCTGTTCC;
ATCCGATTTCCTCCTTT;
CAACAATGAAGATCACT;
CACACGGCTCTCGGCTT;
CCACACGGCTCTCGGCT;
CGGCGTAAGACCTTGTG;
CGTTGTAGTGACGGCTT;
CTGACATGCGGGATAAC;
GAAAGCCGAGAGCCGTG;
GAACAGGCCTCGGTATC;
GAGGTAAGGAACACAGT;
GATACCGAGGCCTGTTC;
GATTCTTGTGATCGCTT;
GGAACAGGCCTCGGTAT;
GGATACCGAGGCCTGTT;
GTTATCCCGCATGTCAG;
TACCGAGGCCTGTTCCT;
TACGGTTATCCCGCATG;
TGACATGCGGGATAACC;
TGGATACCGAGGCCTGT
16 : 73 1.912e-6 AT1G49260.1 | Symbols: | similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G14810.1); similar to MscS Mechanosensitive ion channel [Medicago truncatula] (GB:ABE89426.1) | chr1:18229538-18230635 FORWARD 0 3
#1959 AAAGCCGAGAGCCGTGT;
AAGCCGTCACTACAACG;
AAGTGATCTTCATTGTT;
AATCCGATTTCCTCCTT;
ACACGGCTCTCGGCTTT;
ACGGTTATCCCGCATGT;
ACTGACATGCGGGATAA;
AGCGATCACAAGAATCC;
AGCGATGAGCCTCGAAG;
AGGAACAGGCCTCGGTA;
AGTGATCTTCATTGTTG;
ATACCGAGGCCTGTTCC;
ATCCGATTTCCTCCTTT;
CAACAATGAAGATCACT;
CACACGGCTCTCGGCTT;
CCACACGGCTCTCGGCT;
CGGCGTAAGACCTTGTG;
CGTTGTAGTGACGGCTT;
CTGACATGCGGGATAAC;
GAAAGCCGAGAGCCGTG;
GAACAGGCCTCGGTATC;
GAGGTAAGGAACACAGT;
GATACCGAGGCCTGTTC;
GATTCTTGTGATCGCTT;
GGAACAGGCCTCGGTAT;
GGATACCGAGGCCTGTT;
GTTATCCCGCATGTCAG;
TACCGAGGCCTGTTCCT;
TACGGTTATCCCGCATG;
TGACATGCGGGATAACC;
TGGATACCGAGGCCTGT
16 : 73 1.912e-6 AT1G49260.1 | Symbols: | similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G14810.1); similar to MscS Mechanosensitive ion channel [Medicago truncatula] (GB:ABE89426.1) | chr1:18229538-18230635 FORWARD 0 3
#8063 ACAATCTTCTCCTTAAC;
AGAACACCAGAGCAATG;
AGCAAGTTCCCAATACT;
AGCGTAGACCAACTCCG;
AGGGGTGAGTTTCTTCG;
ATGACATTGCTCTGGTG;
ATGCGAAGAAACTCACC;
CAGTATTGGGAACTTGC;
CGTAGACCAACTCCGCC;
CGTTGTCATTTTAGGGA;
GATGTCCTTGGAGTGCC;
GGGGCGGAGTTGGTCTA;
GTAGACCAACTCCGCCC;
GTCCTTGGAGTGCCGGT;
GTGAGTTTCTTCGCATA;
GTTTCTTGTCATAGACC;
TGACATTGCTCTGGTGT;
TGTAGGTTTTGCACCAT;
TGTCCTTGGAGTGCCGG
13 : 42 2.526e-6 AT3G21170.1 | Symbols: | F-box family protein | chr3:7419982-7421166 FORWARD 0 2
#6510 AGTATCATCATTCGCTT;
AGTTACAACTTTTTTTA;
CTAAATCTATTGAACAT;
CTACCATCCGATCAACA;
CTGGAATACTTGAACTA;
GAATACTTGAACTACCA;
GATGGTAGTTCAAGTAT;
GTATCATCATTCGCTTG;
GTTACAACTTTTTTTAC;
TATCATCATTCGCTTGG;
TGTTGATCGGATGGTAG;
TTCTACCATCCGATCAA;
TTTCTACCATCCGATCA
7 : 4 2.582e-6 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#6546 AATGACTCATTCGCTTG;
ATCCAATGCTTTTTCTA;
CGCTATGTTGGACTTAG;
CGCTATGTTGGACTTAG;
TACAAGCGAATGAGTCA;
TCACGATATCTTCCATT;
TCCTAAGTCCAACATAG;
TTCTAAGTCCAACATAG
8 : 8 2.810e-6 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#6558 AATGACTCATTCGCTTG;
ATCCAATGCTTTTTCTA;
CGCTATGTTGGACTTAG;
CGCTATGTTGGACTTAG;
TACAAGCGAATGAGTCA;
TCACGATATCTTCCATT;
TCCTAAGTCCAACATAG;
TTCTAAGTCCAACATAG
8 : 8 2.810e-6 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#7304 AAAGCTACTGGCAGCTT;
AGAAGTTCTTGCAGCGT;
CAAAGCTGCCAGTAGCT;
CGAGCACGCACGAGCAC;
CTAACAAGCGTCCTGTT;
CTCACATCAATATGCTT;
CTTCTCTACATGTGCTT;
GATAACAGGACGCTTGT;
TAACAAGCGTCCTGTTA;
TGAAGCATATTGATGTG;
TGGCCTCACATCAATAT;
TTTGGAAGCGACTCGCG
10 : 20 4.161e-6 AT3G44580.1 | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44570.1) | chr3:16171499-16171990 REVERSE 0 0
#91 AACCGACGGACTGGCAG;
AATTCCCATTAGTCGCT;
ACCGCTGTCCACCGCCA;
AGTCGGCAGGATTTCCT;
ATCAAGGAAATCCTGCC;
GATAAGGACTGTAACCA;
TCAAGCGACTAATGGGA;
TCCCATTAGTCGCTTGA;
TTAGAGAGGATCTCCGA;
TTGATAACCACCGGAGT
9 : 14 4.411e-6 AT1G44085.1 | Symbols: | glycine-rich protein | chr1:16760550-16760948 REVERSE 0 0
#2034 AAGTAGCAAGCGATGAG;
ACCTTGTGGAGCTTTCC;
AGACCTTGTGGAGCTTT;
AGGCTCATCGCTTGCTA;
AGTGACGGCTTGTGCGG;
ATCTCAAGTTTTCGGCG;
ATCTTCATTGTTGGCGC;
CATATGGGAATTGGCAC;
CATCTCAAGTTTTCGGC;
CCTTTGGTGGATACCGA;
CTCATCGCTTGCTACTT;
CTTTGGTGGATACCGAG;
GAAGCTACGGTTATCCC;
GAATCCACCACACGGCT;
GAGGCTCATCGCTTGCT;
GCTTTCGAAATCCGATT;
GTAGTGACGGCTTGTGC;
GTGACGGCTTGTGCGGC;
TAAGACCTTGTGGAGCT;
TCGAAATCCGATTTCCT;
TCTTGTGATCGCTTTGG;
TGCCGCACAAGCCGTCA;
TGGGAAAGCTCCACAAG;
TTCCAAAGCGATCACAA;
TTCGAAATCCGATTTCC;
TTTCGAAATCCGATTTC
15 : 66 4.501e-6 AT1G49260.1 | Symbols: | similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G14810.1); similar to MscS Mechanosensitive ion channel [Medicago truncatula] (GB:ABE89426.1) | chr1:18229538-18230635 FORWARD 0 3
#9012 AACTTTTTTGTAGACGT;
AAGTTCTCTCGTCAATG;
AATGCTTCTGATTCATT;
AGTTCTCTCGTCAATGG;
ATCTTAAGTGTCGTCTT;
CAACGTCTACAAAAAAG;
CATTGACGAGAGAACTT;
CCATTGACGAGAGAACT;
CCTATGATACTCATTTT;
CGGCATTACGGTAAACA;
CTTGAGGTCCCTACTGA;
TAAGCAGATTTCTCACC;
TAGTTTACATGCAAAAG;
TCAACGTCTACAAAAAA;
TCCATTGACGAGAGAAC;
TCTTGAGGTCCCTACTG;
TGGCCTTTTGCATGTAA;
TGTTTACCGTAATGCCG;
TTGAGGTCCCTACTGAA;
TTGTTTACCGTAATGCC;
TTTACATGCAAAAGGCC
13 : 45 4.822e-6 AT3G06435.1 | Symbols: | unknown protein | chr3:1969127-1970790 REVERSE 0 1
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Session Summary        
Users Input
Number of small RNAs submitted by user 65906,   download original FASTA file
Number of valid small RNAs after pre-processing 65906,   download processed FASTA file and LOG file
transcript/genomic library chosen by user
Number of phase-initiators submitted by user 217,   download original FASTA file
Number of valid phase-initiator sequences after pre-processing 166,   download processed FASTA file and LOG file
Mapping small RNAs onto transcript/genomic sequences
Number of total hits during mapping 15324
Number of small RNAs having hits 8687
Number of transcript/genomic sequences having hits 3440
Clustering phased small RNAs
Number of all phased small RNA clusters (having at least 2 phased small RNAs) 4954
Number of transcript/genomic sequences associated with the phased small RNA clusters 733
Identifying cleavage site
Number of phased small RNA clusters with valid cleavage sites directed by phase-initiators 332