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List view: phased small RNA clusters [#Session ID: 1208291320073926]

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Cluster ID Phased small RNA(s) # of hit position
[phased:non-phased]
P-value Matched transcript Transcript description # of cleavage sites guided by input phase-initiator # of complementary regions
#700 AACTTCTTGAGAAGTGC;
AATCTGGTCATGTGGTT;
AGATTGCAAAATTGGCT;
ATTCAGCCAATTTTGCA;
GATTCTAATGGAGTTGA;
TCTTGATTCTCTTAATG;
TCTTTGTCCGTTGCTAT
7 : 6 1.058e-5 AT2G16620.1 | Symbols: | protein kinase-related | chr2:7212473-7213000 REVERSE 0 1
#2029 AAAGATCAAGCTTAGAT;
AGACTCTAGCAAATCCA;
AGCAGCGTCAGAGGCTT;
AGCCTCTGACGCTGCTG;
ATCAGCAGCGTCAGAGG;
ATCTAAGCTTGATCTTT;
GAGAGCATCTTGGGTTT;
GGAATTCTGTTATGATC;
TCCGAGCAGCGCATAGA;
TGGCTCTATGCGCTGCT
9 : 20 3.519e-5 AT4G27930.1 | Symbols: | unknown protein | chr4:13902641-13902984 REVERSE 0 0
#693 AACTTCTTGAGAAGTGC;
AATCTGGTCATGTGGTT;
AGATTGCAAAATTGGCT;
ATTCAGCCAATTTTGCA;
TCTTGATTCTCTTAATG;
TCTTTGTCCGTTGCTAT;
TTCTTTGTCCGTTGCTA
6 : 4 3.584e-5 AT2G16620.1 | Symbols: | protein kinase-related | chr2:7212473-7213000 REVERSE 0 1
#749 ATAGACTATGGGGATTG;
CAATCACCACGAATATC;
CAGTCGTCTTCGTACTC;
GGAAGCTTTGATGGCGG;
GTCACCACCGTCGCCTC;
TTGGTGGTGGTGTAGAC
6 : 4 3.584e-5 AT2G02440.1 | Symbols: | unknown protein | chr2:638011-639304 FORWARD 0 0
#1181 CCTACGCTCTGGATACA;
CGATCCTATTGTGTTGG;
GTATTTCATAGTCAGAG;
TTCGATCCTATTGTGTT;
TTGCCAAGGATGTTTTC
4 : 0 0.0002 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#1204 CGATCCTATTGTGTTGG;
CTGATCCCTGGTCGGCA;
GTATTTCATAGTCAGAG;
TTCGATCCTATTGTGTT;
TTGCCAAGGATGTTTTC
4 : 0 0.0002 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#1538 CCTACGCTCTGGATACA;
CGATCCTATTGTGTTGG;
GTATTTCATAGTCAGAG;
TTCGATCCTATTGTGTT;
TTGCCAAGGATGTTTTC
4 : 0 0.0002 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
#1561 CGATCCTATTGTGTTGG;
CTGATCCCTGGTCGGCA;
GTATTTCATAGTCAGAG;
TTCGATCCTATTGTGTT;
TTGCCAAGGATGTTTTC
4 : 0 0.0002 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
#703 AACTTCTTGAGAAGTGC;
AGATTGCAAAATTGGCT;
ATTCAGCCAATTTTGCA;
TCTTGATTCTCTTAATG;
TCTTTGTCCGTTGCTAT;
TTCTTTGTCCGTTGCTA
5 : 3 0.0002 AT2G16620.1 | Symbols: | protein kinase-related | chr2:7212473-7213000 REVERSE 0 1
#2043 AAAGATCAAGCTTAGAT;
AGCAGCGTCAGAGGCTT;
ATCTAAGCTTGATCTTT;
CTAAGCTTGATCTTTGT;
GAGAGCATCTTGGGTTT;
GCCAATATGGATTTGCT;
GGAATTCTGTTATGATC;
TCCGAGCAGCGCATAGA;
TCTAAGCTTGATCTTTG;
TGGCTCTATGCGCTGCT
8 : 20 0.0003 AT4G27930.1 | Symbols: | unknown protein | chr4:13902641-13902984 REVERSE 0 0
#2060 AACTTTGAGGACGTACA;
AGACTCTAGCAAATCCA;
AGACTCTTTTGCTCTCC;
AGCCTCTGACGCTGCTG;
ATCAGCAGCGTCAGAGG;
ATCTTTCTCAACATCTC;
ATTGGCATCTAAGCTTG;
TGAATGGCTCTATGCGC;
TTGGCATCTAAGCTTGA
8 : 20 0.0003 AT4G27930.1 | Symbols: | unknown protein | chr4:13902641-13902984 REVERSE 0 0
#1869 AAGATGCATACAGATTG;
AGAAGATTATTGTCTTG;
TCTTTGGTCTGTCCTCT;
TTATGTGTTCAAGAACG
4 : 1 0.0006 AT4G21370.1 | Symbols: | S-locus protein kinase, putative | chr4:11383895-11387147 REVERSE 0 2
#1186 CCTACGCTCTGGATACA;
CGATCCTATTGTGTTGG;
CGGCGATACGCTCCTGG;
GTATTTCATAGTCAGAG;
TTCGATCCTATTGTGTT
4 : 1 0.0006 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#1543 CCTACGCTCTGGATACA;
CGATCCTATTGTGTTGG;
CGGCGATACGCTCCTGG;
GTATTTCATAGTCAGAG;
TTCGATCCTATTGTGTT
4 : 1 0.0006 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
#1863 AAGATGCATACAGATTG;
AGAAGATTATTGTCTTG;
TCTTTGGTCTGTCCTCT;
TTATGTGTTCAAGAACG
4 : 1 0.0006 AT4G21366.1 | Symbols: | S-locus protein kinase-related | chr4:11383552-11383966 FORWARD 0 0
#320 CCGTCACTACAACGGCG;
GTCAGCTGCATGGATCT;
TCTTCAGATCCATGCAG;
TTATGTTCTCCATGGCC;
TTCAGATCCATGCAGCT;
TTTTCGGCGTAAGACCT
5 : 5 0.0008 AT1G49260.1 | Symbols: | similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G14810.1); similar to MscS Mechanosensitive ion channel [Medicago truncatula] (GB:ABE89426.1) | chr1:18229538-18230635 FORWARD 0 3
#1168 AATTTCAAAGATTACCC;
CACCCACGTCGCCGCGA;
CATCGTGATGGGGATAG;
CGTCCCTGCCCTTTGTA;
TTGAATGATCCGGTGAA
5 : 5 0.0008 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#1525 AATTTCAAAGATTACCC;
CACCCACGTCGCCGCGA;
CATCGTGATGGGGATAG;
CGTCCCTGCCCTTTGTA;
TTGAATGATCCGGTGAA
5 : 5 0.0008 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
#2297 ATACTTTAGTTGCCATT;
CCAACGCTATAAGGATC;
CTAAGAGATCTTAACAT;
CTAGCCACTCCGGATCT;
TCATTTTGATAAGTTGA
5 : 5 0.0008 AT5G22860.1 | Symbols: | serine carboxypeptidase S28 family protein | chr5:7639321-7642987 REVERSE 0 1
#702 AATCTGGTCATGTGGTT;
ATTCAGCCAATTTTGCA;
TCTAATGGAGTTGATCA;
TCTTGATTCTCTTAATG;
TCTTTGTCCGTTGCTAT;
TTCTTTGTCCGTTGCTA
5 : 6 0.0012 AT2G16620.1 | Symbols: | protein kinase-related | chr2:7212473-7213000 REVERSE 1 1
#1173 AATTTCAAAGATTACCC;
AGGTCTGTGATGCCCTT;
CATCGTGATGGGGATAG;
CGTCCCTGCCCTTTGTA;
TTGAATGATCCGGTGAA
5 : 6 0.0012 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#1530 AATTTCAAAGATTACCC;
AGGTCTGTGATGCCCTT;
CATCGTGATGGGGATAG;
CGTCCCTGCCCTTTGTA;
TTGAATGATCCGGTGAA
5 : 6 0.0012 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
#1871 AGAAGATTATTGTCTTG;
GTTGTGGAATCCTCTGT;
TCTTTGGTCTGTCCTCT;
TTATCGAATCGACGATC
4 : 2 0.0014 AT4G21370.1 | Symbols: | S-locus protein kinase, putative | chr4:11383895-11387147 REVERSE 0 2
#1864 AGAAGATTATTGTCTTG;
GTTGTGGAATCCTCTGT;
TCTTTGGTCTGTCCTCT;
TTATCGAATCGACGATC
4 : 2 0.0014 AT4G21366.1 | Symbols: | S-locus protein kinase-related | chr4:11383552-11383966 FORWARD 0 0
#2045 AACTTTGAGGACGTACA;
AGACTCTTTTGCTCTCC;
AGCCTCTGACGCTGCTG;
ATCAGCAGCGTCAGAGG;
ATCTTTCTCAACATCTC;
ATTGGCATCTAAGCTTG;
GTTGAATGGCTCTATGC;
TGAATGGCTCTATGCGC;
TTGGCATCTAAGCTTGA
7 : 20 0.0016 AT4G27930.1 | Symbols: | unknown protein | chr4:13902641-13902984 REVERSE 0 0
#2042 AGACTCTTTTGCTCTCC;
AGCTTAGATGCCAATAT;
ATCCTCTTACTCCGGCC;
ATCTTTCTCAACATCTC;
CATATTGGCATCTAAGC;
CTGACGCTGCTGATGTT;
GCTTAGATGCCAATATG;
GTTGAATGGCTCTATGC
7 : 21 0.0020 AT4G27930.1 | Symbols: | unknown protein | chr4:13902641-13902984 REVERSE 0 0
#2046 AGACTCTTTTGCTCTCC;
AGCTTAGATGCCAATAT;
ATCTTTCTCAACATCTC;
CATATTGGCATCTAAGC;
CTGACGCTGCTGATGTT;
GCTTAGATGCCAATATG;
GTTGAATGGCTCTATGC;
TATGATCTGTACGTCCT
7 : 21 0.0020 AT4G27930.1 | Symbols: | unknown protein | chr4:13902641-13902984 REVERSE 0 0
#694 AACTTCTTGAGAAGTGC;
AGATTGCAAAATTGGCT;
ATTCAGCCAATTTTGCA;
TCTTGATTCTCTTAATG
4 : 3 0.0027 AT2G16620.1 | Symbols: | protein kinase-related | chr2:7212473-7213000 REVERSE 0 1
#1185 CCTACGCTCTGGATACA;
CCTCCGGCGCTGTTACT;
CGGCCGGTCCGCCTTTG;
TTCGATCCTATTGTGTT
4 : 3 0.0027 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#1197 AATTTCAAAGATTACCC;
AGGTCTGTGATGCCCTT;
CATCGTGATGGGGATAG;
TAACTAGCTACGTGGAG;
TTCATCGTGATGGGGAT
4 : 3 0.0027 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
  Prev Page     Next Page     Page No. 1 / Total 4 Pages , 109 Records



Session Summary        
Users Input
Number of small RNAs submitted by user 12095,   download original FASTA file
Number of valid small RNAs after pre-processing 12095,   download processed FASTA file and LOG file
transcript/genomic library chosen by user Arabidopsis thaliana TAIR7, cDNA, released 04/25/2007
Number of phase-initiators submitted by user 217,   download original FASTA file
Number of valid phase-initiator sequences after pre-processing 166,   download processed FASTA file and LOG file
Mapping small RNAs onto transcript/genomic sequences
Number of total hits during mapping 2594
Number of small RNAs having hits 1351
Number of transcript/genomic sequences having hits 1255
Clustering phased small RNAs
Number of all phased small RNA clusters (having at least 2 phased small RNAs) 392
Number of transcript/genomic sequences associated with the phased small RNA clusters 100
Identifying cleavage site
Number of phased small RNA clusters with valid cleavage sites directed by phase-initiators 23