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List view: phased small RNA clusters [#Session ID: 1208293695718944]

  Prev Page     Next Page     Page No. 1 / Total 1 Pages , 16 Records    
Cluster ID Phased small RNA(s) # of hit position
[phased:non-phased]
P-value Matched transcript Transcript description # of cleavage sites guided by input phase-initiator # of complementary regions
#671 AGAGCTTCCTTGAGTCC;
AGCTTCCTTGAGTCCAT;
GATTGGACTGAAGGGAG;
TAGCTTCCGACTCATTC;
TTGGACTGAAGGGAGCT
3 : 0 0.0030 AT4G23713.1 | Symbols: MIR319a, MIR319 | MIR319/MIR319a; miRNA | chr4:12352966-12353141 FORWARD 0 5
#672 AGCTTCCTTGAGTCCAT;
GATTGGACTGAAGGGAG;
TAGCTTCCGACTCATTC;
TTGGACTGAAGGGAGCT
3 : 0 0.0030 AT4G23713.1 | Symbols: MIR319a, MIR319 | MIR319/MIR319a; miRNA | chr4:12352966-12353141 FORWARD 0 5
#858 GAATCTTGATGATGCTG;
GCAGCACCATTAAGATT;
GGAATCTTGATGATGCT;
TGAATCTTAATGGTGCT;
TGTGAATCTTAATGGTG
3 : 0 0.0030 AT5G59505.1 | Symbols: MIR172E | MIR172E; miRNA | chr5:24005698-24005822 FORWARD 0 4
#860 GAATCTTGATGATGCTG;
GCAGCACCATTAAGATT;
GGAATCTTGATGATGCT;
TGAATCTTAATGGTGCT;
TGTGAATCTTAATGGTG
3 : 0 0.0030 AT5G59505.1 | Symbols: MIR172E | MIR172E; miRNA | chr5:24005698-24005822 FORWARD 0 4
#344 CGGGATCGGAGTAATGA;
GTCGGCGATACGCTCCT;
TACGCTCTGGATACATT
3 : 0 0.0030 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#495 CGGGATCGGAGTAATGA;
GTCGGCGATACGCTCCT;
TACGCTCTGGATACATT
3 : 0 0.0030 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
#526 ATCTGCTTAGTGGAAAG;
TAGACGTTGACAATTCA;
TCTCACCTGTGCAAATA;
TTTCTCACCTGTGCAAA
3 : 0 0.0030 AT3G06435.1 | Symbols: | unknown protein | chr3:1969127-1970790 REVERSE 0 1
#651 AAGCTTAGATGCCAATA;
CTTTGAGGACGTACAGA;
TATTGGCATCTAAGCTT;
TCTGTACGTCCTCAAAG;
TTGAATGGCTCTATGCG;
TTGGCATCTAAGCTTGA
5 : 9 0.0037 AT4G27930.1 | Symbols: | unknown protein | chr4:13902641-13902984 REVERSE 0 0
#643 AAGCTTAGATGCCAATA;
CTTTGAGGACGTACAGA;
TATTGGCATCTAAGCTT;
TGACGCTGCTGATGTTT;
TTGAATGGCTCTATGCG
5 : 10 0.0050 AT4G27930.1 | Symbols: | unknown protein | chr4:13902641-13902984 REVERSE 0 0
#647 CAAGAGTTCCGGTATTC;
CTTTCCATCCTCTTACT;
TGGCTCTATGCGCTGCT;
TTGATCTTTCTCAACAT;
TTGGCATCTAAGCTTGA
5 : 10 0.0050 AT4G27930.1 | Symbols: | unknown protein | chr4:13902641-13902984 REVERSE 0 0
#646 CAAGAGTTCCGGTATTC;
TCTGTACGTCCTCAAAG;
TGGCTCTATGCGCTGCT;
TTGATCTTTCTCAACAT;
TTGGCATCTAAGCTTGA
5 : 11 0.0065 AT4G27930.1 | Symbols: | unknown protein | chr4:13902641-13902984 REVERSE 0 0
#817 GAGAATCTTGATGATGC;
GCAGCACCATTAAGATT;
TGAATCTTAATGGTGCT;
TGTGAATCTTAATGGTG
3 : 1 0.0086 AT5G04275.1 | Symbols: MIR172B, MIR172 | MIR172/MIR172B; miRNA | chr5:1188212-1188300 REVERSE 0 3
#818 GAGAATCTTGATGATGC;
GCAGCACCATTAAGATT;
TGAATCTTAATGGTGCT;
TGTGAATCTTAATGGTG
3 : 1 0.0086 AT5G04275.1 | Symbols: MIR172B, MIR172 | MIR172/MIR172B; miRNA | chr5:1188212-1188300 REVERSE 0 3
#524 CTCACCCATCGATGTGC;
CTGTTATCCCTCTCATA;
TGCAGCATCTGTTTTGA
3 : 1 0.0086 AT3G06435.1 | Symbols: | unknown protein | chr3:1969127-1970790 REVERSE 0 1
#518 GAAGATTGCGAAATTGG;
GAATCTTTAATCTTCGG;
TTCGTCTGTTGCTATGG
3 : 3 0.0267 AT3G23650.1 | Symbols: | protein kinase-related | chr3:8510696-8511203 REVERSE 0 2
#659 TATTGGCATCTAAGCTT;
TCTGTACGTCCTCAAAG;
TTGAATGGCTCTATGCG;
TTGATCTTTCTCAACAT;
TTGGCATCTAAGCTTGA
4 : 10 0.0298 AT4G27930.1 | Symbols: | unknown protein | chr4:13902641-13902984 REVERSE 0 0
  Prev Page     Next Page     Page No. 1 / Total 1 Pages , 16 Records



Session Summary        
Users Input
Number of small RNAs submitted by user 3044,   download original FASTA file
Number of valid small RNAs after pre-processing 3044,   download processed FASTA file and LOG file
transcript/genomic library chosen by user Arabidopsis thaliana TAIR7, cDNA, released 04/25/2007
Number of phase-initiators submitted by user 217,   download original FASTA file
Number of valid phase-initiator sequences after pre-processing 166,   download processed FASTA file and LOG file
Mapping small RNAs onto transcript/genomic sequences
Number of total hits during mapping 884
Number of small RNAs having hits 423
Number of transcript/genomic sequences having hits 495
Clustering phased small RNAs
Number of all phased small RNA clusters (having at least 2 phased small RNAs) 84
Number of transcript/genomic sequences associated with the phased small RNA clusters 33
Identifying cleavage site
Number of phased small RNA clusters with valid cleavage sites directed by phase-initiators 4