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List view: phased small RNA clusters [#Session ID: 1208293695718944]

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Cluster ID Phased small RNA(s) # of hit position
[phased:non-phased]
P-value Matched transcript Transcript description # of cleavage sites guided by input phase-initiator # of complementary regions
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Session Summary        
Users Input
Number of small RNAs submitted by user 3044,   download original FASTA file
Number of valid small RNAs after pre-processing 3044,   download processed FASTA file and LOG file
transcript/genomic library chosen by user Arabidopsis thaliana TAIR7, cDNA, released 04/25/2007
Number of phase-initiators submitted by user 217,   download original FASTA file
Number of valid phase-initiator sequences after pre-processing 166,   download processed FASTA file and LOG file
Mapping small RNAs onto transcript/genomic sequences
Number of total hits during mapping 884
Number of small RNAs having hits 423
Number of transcript/genomic sequences having hits 495
Clustering phased small RNAs
Number of all phased small RNA clusters (having at least 2 phased small RNAs) 84
Number of transcript/genomic sequences associated with the phased small RNA clusters 33
Identifying cleavage site
Number of phased small RNA clusters with valid cleavage sites directed by phase-initiators 4