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List view: phased small RNA clusters [#Session ID: 1208295997773562]

  Prev Page     Next Page     Page No. 1 / Total 5 Pages , 121 Records    
Cluster ID Phased small RNA(s) # of hit position
[phased:non-phased]
P-value Matched transcript Transcript description # of cleavage sites guided by input phase-initiator # of complementary regions
#599 AAAGAGTAAGATGGATC;
AATCTATTGAACATCGT;
ACACGATGTTCAATAGA;
AGGTATTCGAGTATATG;
ATAAGACTGAAACATAT;
ATAATCAAGTGAATAGT;
GAATACTTGAACTACCA;
GATGGTAGAAATGGGAT;
GATGGTAGTTCAAGTAT;
GTATCATCATTCGCTTG;
GTTACAACTTTTTTTAC;
TAGGTCTTTAATCCCAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATGGGATTAAAGACCT;
TCCAAGCGAATGATGAT;
TTACAACTTTTTTTACG;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGAACTTGTGTATTT
19 : 5 1.757e-23 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#606 AAAGAGTAAGATGGATC;
AATCTATTGAACATCGT;
ACACGATGTTCAATAGA;
AGGTATTCGAGTATATG;
ATAAGACTGAAACATAT;
ATAATCAAGTGAATAGT;
GAATACTTGAACTACCA;
GATGGTAGAAATGGGAT;
GATGGTAGTTCAAGTAT;
GTATCATCATTCGCTTG;
GTTACAACTTTTTTTAC;
TAGGTCTTTAATCCCAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATGGGATTAAAGACCT;
TCCAAGCGAATGATGAT;
TTACAACTTTTTTTACG;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGAACTTGTGTATTT
19 : 5 1.757e-23 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#592 AAAGAGTAAGATGGATC;
AATCTATTGAACATCGT;
ACACGATGTTCAATAGA;
AGGTATTCGAGTATATG;
ATAAGACTGAAACATAT;
ATAATCAAGTGAATAGT;
GAATACTTGAACTACCA;
GATGGTAGAAATGGGAT;
GATGGTAGTTCAAGTAT;
GTTACAACTTTTTTTAC;
TAGGTCTTTAATCCCAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATGGGATTAAAGACCT;
TTACAACTTTTTTTACG;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGAACTTGTGTATTT;
TTTGCATATACTCGAAT
18 : 5 1.221e-21 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#611 AAAGAGTAAGATGGATC;
AATCTATTGAACATCGT;
ACACGATGTTCAATAGA;
AGGTATTCGAGTATATG;
ATAAGACTGAAACATAT;
GAATACTTGAACTACCA;
GATGGTAGAAATGGGAT;
GATGGTAGTTCAAGTAT;
GTTACAACTTTTTTTAC;
TAGGTCTTTAATCCCAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATGGGATTAAAGACCT;
TTACAACTTTTTTTACG;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGAACTTGTGTATTT;
TTTGCATATACTCGAAT
17 : 6 2.434e-19 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#587 AAAGAGTAAGATGGATC;
AATCTATTGAACATCGT;
ACACGATGTTCAATAGA;
AGGTATTCGAGTATATG;
ATAAGACTGAAACATAT;
GAATACTTGAACTACCA;
GATGGTAGAAATGGGAT;
GATGGTAGTTCAAGTAT;
GTTACAACTTTTTTTAC;
TAGGTCTTTAATCCCAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATGGGATTAAAGACCT;
TTACAACTTTTTTTACG;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGCATATACTCGAAT
16 : 6 1.052e-17 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#588 AAAGAGTAAGATGGATC;
AATCTATTGAACATCGT;
ACACGATGTTCAATAGA;
AGGTATTCGAGTATATG;
ATAAGACTGAAACATAT;
GAATACTTGAACTACCA;
GATGGTAGAAATGGGAT;
GATGGTAGTTCAAGTAT;
GTTACAACTTTTTTTAC;
TAGGTCTTTAATCCCAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATGGGATTAAAGACCT;
TTACAACTTTTTTTACG;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGCATATACTCGAAT
16 : 6 1.052e-17 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#595 AAAGAGTAAGATGGATC;
AGGTATTCGAGTATATG;
ATAAGACTGAAACATAT;
GAATACTTGAACTACCA;
GATGGTAGAAATGGGAT;
GATGGTAGTTCAAGTAT;
GTTACAACTTTTTTTAC;
TAGGTCTTTAATCCCAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATGGGATTAAAGACCT;
TTACAACTTTTTTTACG;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGCATATACTCGAAT
14 : 6 1.204e-14 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#597 AAAGAGTAAGATGGATC;
AGGTATTCGAGTATATG;
ATAAGACTGAAACATAT;
GAATACTTGAACTACCA;
GATGGTAGAAATGGGAT;
GATGGTAGTTCAAGTAT;
GTTACAACTTTTTTTAC;
TAGGTCTTTAATCCCAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATGGGATTAAAGACCT;
TTACAACTTTTTTTACG;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGCATATACTCGAAT
14 : 6 1.204e-14 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#596 AAAGAGTAAGATGGATC;
AGGTATTCGAGTATATG;
ATAAGACTGAAACATAT;
GATGGTAGAAATGGGAT;
GTTACAACTTTTTTTAC;
TAGGTCTTTAATCCCAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATGGGATTAAAGACCT;
TTACAACTTTTTTTACG;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGCATATACTCGAAT
12 : 6 7.923e-12 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#574 AAAACAATGAATATTGT;
AAGTAACTGTATTAGCA;
ACAGTTGCTAATACAGT;
ATATTCCAGGATATGCA;
ATGTGTTCAAGTAAATG;
ATTTTCTAAGATCCACC;
CCAATGTCTTTTCTAGT;
TACAAGCGAATAGACCA;
TATTCCAGGATATGCAA;
TCGGTGGATCTTAGAAA;
TTCTAAGTCCAACATAG;
TTCTAAGTTCAACATAT;
TTTCAAGTCGTCTAAAG
12 : 7 1.986e-11 AT2G39675.1 | Symbols: TAS1C | TAS1C; other RNA | chr2:16544366-16545355 REVERSE 2 10
#259 AAAAATTGGGAGATATC;
AACAAGCGAATGAGTCA;
ACAAGCGAATGAGTCAT;
GTGAATGGTTAGATACC;
TATTATCAGAGTAGTTA;
TCGGTATCTAACCATTC;
TTCTAAGTCCAACATAG;
TTCTAAGTCCAACATAG;
TTCTTCTACCATCCTAT;
TTTTTACGTATAATATC
9 : 0 2.167e-11 AT1G50055.1 | Symbols: TAS1B | TAS1B; other RNA | chr1:18552872-18553710 REVERSE 1 9
#260 AAAAATTGGGAGATATC;
ACAAGCGAATGAGTCAT;
GTGAATGGTTAGATACC;
TATTATCAGAGTAGTTA;
TCGGTATCTAACCATTC;
TTCTAAGTCCAACATAG;
TTCTAAGTCCAACATAG;
TTCTTCTACCATCCTAT;
TTTTTACGTATAATATC
9 : 0 2.167e-11 AT1G50055.1 | Symbols: TAS1B | TAS1B; other RNA | chr1:18552872-18553710 REVERSE 1 9
#591 AAAGAGTAAGATGGATC;
AGGTATTCGAGTATATG;
ATAAGACTGAAACATAT;
GTTACAACTTTTTTTAC;
TAGGTCTTTAATCCCAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATGGGATTAAAGACCT;
TTACAACTTTTTTTACG;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGCATATACTCGAAT
11 : 5 6.506e-11 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#571 AAAACAATGAATATTGT;
AAGTAACTGTATTAGCA;
ACAGTTGCTAATACAGT;
ATATTCCAGGATATGCA;
ATGTGTTCAAGTAAATG;
ATTTTCTAAGATCCACC;
CCAATGTCTTTTCTAGT;
TATTCCAGGATATGCAA;
TCGGTGGATCTTAGAAA;
TTCTAAGTCCAACATAG;
TTCTAAGTTCAACATAT;
TTTCAAGTCGTCTAAAG
11 : 7 3.984e-10 AT2G39675.1 | Symbols: TAS1C | TAS1C; other RNA | chr2:16544366-16545355 REVERSE 2 10
#578 AAAACAATGAATATTGT;
AAGTAACTGTATTAGCA;
ACAGTTGCTAATACAGT;
ATATTCCAGGATATGCA;
ATGTGTTCAAGTAAATG;
ATTTTCTAAGATCCACC;
CCAATGTCTTTTCTAGT;
TATTCCAGGATATGCAA;
TCGGTGGATCTTAGAAA;
TTCTAAGTCCAACATAG;
TTCTAAGTTCAACATAT;
TTTCAAGTCGTCTAAAG
11 : 7 3.984e-10 AT2G39675.1 | Symbols: TAS1C | TAS1C; other RNA | chr2:16544366-16545355 REVERSE 2 10
#261 AAAAATTGGGAGATATC;
GTGAATGGTTAGATACC;
TATTATCAGAGTAGTTA;
TCGGTATCTAACCATTC;
TTCTAAGTCCAACATAG;
TTCTAAGTCCAACATAG;
TTCTTCTACCATCCTAT;
TTTTTACGTATAATATC
8 : 0 5.726e-10 AT1G50055.1 | Symbols: TAS1B | TAS1B; other RNA | chr1:18552872-18553710 REVERSE 1 9
#263 AAAAATTGGGAGATATC;
GTGAATGGTTAGATACC;
TATTATCAGAGTAGTTA;
TCGGTATCTAACCATTC;
TTCTAAGTCCAACATAG;
TTCTAAGTCCAACATAG;
TTCTTCTACCATCCTAT;
TTTTTACGTATAATATC
8 : 0 5.726e-10 AT1G50055.1 | Symbols: TAS1B | TAS1B; other RNA | chr1:18552872-18553710 REVERSE 1 9
#602 AGGTATTCGAGTATATG;
ATAAGACTGAAACATAT;
GTTACAACTTTTTTTAC;
TAGGTCTTTAATCCCAT;
TATATCCCATTTCTACC;
TATATGTTTCAGTCTTA;
TATGGGATTAAAGACCT;
TATTCGAGTATATGCAA;
TTACAACTTTTTTTACG;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGCATATACTCGAAT
10 : 6 3.192e-9 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 1 11
#579 AAAACAATGAATATTGT;
AAGTAACTGTATTAGCA;
ACAGTTGCTAATACAGT;
ATATTCCAGGATATGCA;
ATGTGTTCAAGTAAATG;
CCAATGTCTTTTCTAGT;
TATTCCAGGATATGCAA;
TCGAATATGTTTTGTAT;
TTCTAAGTCCAACATAG;
TTCTAAGTTCAACATAT;
TTTCAAGTCGTCTAAAG
10 : 7 7.079e-9 AT2G39675.1 | Symbols: TAS1C | TAS1C; other RNA | chr2:16544366-16545355 REVERSE 2 10
#620 ACAAGCGAATGAGTCAT;
ATATTCTAGGATATGCA;
ATTTCCTAAGATCCAAT;
ATTTTCTAAGATCTTAT;
TATTCTAGGATATGCAA;
TGATTGGATCTTAGGAA;
TTCTAAGTCCAACATAG;
TTTAAGTCTAACATAGC
7 : 0 1.416e-8 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#623 ATATTCTAGGATATGCA;
ATTTCCTAAGATCCAAT;
ATTTTCTAAGATCTTAT;
TATTCTAGGATATGCAA;
TGATTGGATCTTAGGAA;
TGTGAACATATTCAAGG;
TTCTAAGTCCAACATAG;
TTTAAGTCTAACATAGC
7 : 0 1.416e-8 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#624 ACAAGCGAATGAGTCAT;
ATATTCTAGGATATGCA;
ATTTCCTAAGATCCAAT;
ATTTTCTAAGATCTTAT;
TACAAGCGAATGAGTCA;
TATTCTAGGATATGCAA;
TGATTGGATCTTAGGAA;
TTCTAAGTCCAACATAG;
TTTAAGTCTAACATAGC
7 : 0 1.416e-8 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#603 AGGTATTCGAGTATATG;
ATAAGACTGAAACATAT;
GTTACAACTTTTTTTAC;
TAGGTCTTTAATCCCAT;
TATATGTTTCAGTCTTA;
TATGGGATTAAAGACCT;
TATTCGAGTATATGCAA;
TTACAACTTTTTTTACG;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGCATATACTCGAAT
9 : 5 2.377e-8 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 0 11
#580 AAAACAATGAATATTGT;
AAGTAACTGTATTAGCA;
ACAGTTGCTAATACAGT;
ATATTCCAGGATATGCA;
ATGTGTTCAAGTAAATG;
CCAATGTCTTTTCTAGT;
TATTCCAGGATATGCAA;
TCGAATATGTTTTGTAT;
TTCTAAGTTCAACATAT;
TTTCAAGTCGTCTAAAG
9 : 7 1.114e-7 AT2G39675.1 | Symbols: TAS1C | TAS1C; other RNA | chr2:16544366-16545355 REVERSE 1 10
#687 AGAGATAGATATCTATT;
ATCTCTTTCTAAACGTT;
ATGCATTTCATTATTCT;
CCTCTAATTCGTTCGAG;
TGACTCGAACGAATTAG;
TTCTTGACCTTGTAAGA;
TTGAGAAGAGATAGAAT;
TTTCTTGACCTTGTAAG;
TTTCTTGACCTTGTAAG
8 : 4 1.651e-7 AT3G17185.1 | Symbols: TAS3, TASIR-ARF | TAS3/TASIR-ARF (TRANS-ACTING SIRNA3); other RNA | chr3:5861497-5862443 FORWARD 0 3
#1040 AGAGATAGATATCTATT;
ATCTCTTTCTAAACGTT;
ATGCATTTCATTATTCT;
CCTCTAATTCGTTCGAG;
TGACTCGAACGAATTAG;
TTCTTGACCTTGTAAGA;
TTGAGAAGAGATAGAAT;
TTTCTTGACCTTGTAAG;
TTTCTTGACCTTGTAAG
8 : 4 1.651e-7 AT3G17185.2 | Symbols: TAS3, TASIR-ARF | TAS3/TASIR-ARF (TRANS-ACTING SIRNA3); other RNA | chr3:5861497-5862443 FORWARD 0 3
#262 AAAAATTGGGAGATATC;
TATTATCAGAGTAGTTA;
TTCTAAGTCCAACATAG;
TTCTAAGTCCAACATAG;
TTCTTCTACCATCCTAT;
TTTTTACGTATAATATC
6 : 0 3.293e-7 AT1G50055.1 | Symbols: TAS1B | TAS1B; other RNA | chr1:18552872-18553710 REVERSE 1 9
#629 ATATTCTAGGATATGCA;
ATTTCCTAAGATCCAAT;
TATTCTAGGATATGCAA;
TGATTGGATCTTAGGAA;
TGTGAACATATTCAAGG;
TTCTAAGTCCAACATAG;
TTTAAGTCTAACATAGC
6 : 0 3.293e-7 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#600 AAAGAGTAAGATGGATC;
AGGTATTCGAGTATATG;
GTTACAACTTTTTTTAC;
TAGGTCTTTAATCCCAT;
TATGGGATTAAAGACCT;
TTACAACTTTTTTTACG;
TTGCATATACTCGAATA;
TTGTTGATCGGATGGTA;
TTTCTACCATCCGATCA;
TTTGCATATACTCGAAT
8 : 5 3.830e-7 AT2G39681.1 | Symbols: TAS2 | TAS2; other RNA | chr2:16546462-16547495 REVERSE 0 11
#572 AAAACAATGAATATTGT;
AAGTAACTGTATTAGCA;
ACAGTTGCTAATACAGT;
ATATTCCAGGATATGCA;
ATGTGTTCAAGTAAATG;
CCAATGTCTTTTCTAGT;
TATTCCAGGATATGCAA;
TCGAATATGTTTTGTAT;
TTTCAAGTCGTCTAAAG
8 : 6 8.021e-7 AT2G39675.1 | Symbols: TAS1C | TAS1C; other RNA | chr2:16544366-16545355 REVERSE 1 10
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Session Summary        
Users Input
Number of small RNAs submitted by user 1326,   download original FASTA file
Number of valid small RNAs after pre-processing 1326,   download processed FASTA file and LOG file
transcript/genomic library chosen by user Arabidopsis thaliana TAIR7, cDNA, released 04/25/2007
Number of phase-initiators submitted by user 217,   download original FASTA file
Number of valid phase-initiator sequences after pre-processing 166,   download processed FASTA file and LOG file
Mapping small RNAs onto transcript/genomic sequences
Number of total hits during mapping 1562
Number of small RNAs having hits 421
Number of transcript/genomic sequences having hits 636
Clustering phased small RNAs
Number of all phased small RNA clusters (having at least 2 phased small RNAs) 228
Number of transcript/genomic sequences associated with the phased small RNA clusters 29
Identifying cleavage site
Number of phased small RNA clusters with valid cleavage sites directed by phase-initiators 60