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List view: phased small RNA clusters [#Session ID: 1208296718542174]

  Prev Page     Next Page     Page No. 1 / Total 2 Pages , 44 Records    
Cluster ID Phased small RNA(s) # of hit position
[phased:non-phased]
P-value Matched transcript Transcript description # of cleavage sites guided by input phase-initiator # of complementary regions
#593 ACGATATCTTCCATTTC;
ATTTTCTAAGATCTTAT;
TACAAGCGAATGAGTCA;
TTCTAAGTCCAACATAG
4 : 0 0.0002 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#526 ATCTTTGAAATTTCATC;
GCCCTTTGTACACACCG;
GGCGGTGTGTACAAAGG;
TGCCCTTAGATGTTCTG;
TGGGGATAGATCATTGC;
TTGAGGCAATAACAGGT
6 : 8 0.0003 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#824 ATCTTTGAAATTTCATC;
GCCCTTTGTACACACCG;
GGCGGTGTGTACAAAGG;
TGCCCTTAGATGTTCTG;
TGGGGATAGATCATTGC;
TTGAGGCAATAACAGGT
6 : 8 0.0003 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
#524 AAACGATGCCGACCAGG;
ACCGTCCTAGTCTCAAC;
GGGCTCGAAGACGATCA;
TTAGCATGGGATAACAT
4 : 1 0.0006 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#822 AAACGATGCCGACCAGG;
ACCGTCCTAGTCTCAAC;
GGGCTCGAAGACGATCA;
TTAGCATGGGATAACAT
4 : 1 0.0006 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
#505 ATGAACGAATTCAGACT;
GTATGAACGAATTCAGA;
GTGAAACTGCGAATGGC;
TATGAACGAATTCAGAC;
TCAGTTATAGTTTGTTT;
TTATCCGAGTAGTAGTT
4 : 2 0.0014 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#802 ATGAACGAATTCAGACT;
GTATGAACGAATTCAGA;
GTGAAACTGCGAATGGC;
TATGAACGAATTCAGAC;
TCAGTTATAGTTTGTTT;
TTATCCGAGTAGTAGTT
4 : 2 0.0014 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
#470 ACCTCAGCCTGCTAACT;
ATCTTTGAAATTTCATC;
CTCAGCCTGCTAACTAG;
TACGTGGAGGCATCCCT;
TGGGGATAGATCATTGC;
TTGAGGCAATAACAGGT
5 : 8 0.0027 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#766 ACCTCAGCCTGCTAACT;
ATCTTTGAAATTTCATC;
CTCAGCCTGCTAACTAG;
TACGTGGAGGCATCCCT;
TGGGGATAGATCATTGC;
TTGAGGCAATAACAGGT
5 : 8 0.0027 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
#480 ATGAACGAATTCAGACT;
GTCGCCAGCACAGAGGC;
TCAGTTATAGTTTGTTT;
TTATCCGAGTAGTAGTT
4 : 3 0.0027 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#521 CAGGAGCGTATCGCCGA;
GCATTGGTCGGCTTGTC;
GGCGCTGTTACTTTGAA;
TGGAGGGCAAGTCTGGT;
TTGGTCGGCTTGTCCCT
4 : 3 0.0027 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#777 ATGAACGAATTCAGACT;
GTCGCCAGCACAGAGGC;
TCAGTTATAGTTTGTTT;
TTATCCGAGTAGTAGTT
4 : 3 0.0027 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
#819 CAGGAGCGTATCGCCGA;
GCATTGGTCGGCTTGTC;
GGCGCTGTTACTTTGAA;
TGGAGGGCAAGTCTGGT;
TTGGTCGGCTTGTCCCT
4 : 3 0.0027 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
#592 ACGATATCTTCCATTTC;
ATTTTCTAAGATCTTAT;
TTCTAAGTCCAACATAG
3 : 0 0.0030 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#868 AGGGACAATATTTGCAC;
TGTGCAAATATTGTCCC;
TTCCACTAAGCAGATTT
3 : 0 0.0030 AT3G06435.1 | Symbols: | unknown protein | chr3:1969127-1970790 REVERSE 0 1
#517 CAGGAGCGTATCGCCGA;
GCATTGGTCGGCTTGTC;
TCGGCCGGTCCGCCTTT;
TTAGCATGGGATAACAT
4 : 4 0.0045 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#815 CAGGAGCGTATCGCCGA;
GCATTGGTCGGCTTGTC;
TCGGCCGGTCCGCCTTT;
TTAGCATGGGATAACAT
4 : 4 0.0045 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
#511 CCATTGGAGGGCAAGTC;
TACCCAATCCTGACACG;
TCGGCCGGTCCGCCTTT;
TGGAGGGCAAGTCTGGT
3 : 1 0.0086 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#518 GAACCTGCGGAAGGATC;
GACGTCGCGGGCGGCGA;
TGAATGATCCGGTGAAG
3 : 1 0.0086 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#816 GAACCTGCGGAAGGATC;
GACGTCGCGGGCGGCGA;
TGAATGATCCGGTGAAG
3 : 1 0.0086 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
#665 AAGACATTGTTTGAGAT;
TCGTAAATCTATACATG;
TCGTGTTCCAAAAGTCA
3 : 1 0.0086 AT3G44580.1 | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44570.1) | chr3:16171499-16171990 REVERSE 0 0
#492 CGATTGAATGATCCGGT;
CTACGTCCCTGCCCTTT;
GAACCTGCGGAAGGATC;
GTGTTCGGATCGCGGCG
4 : 6 0.0101 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#789 CGATTGAATGATCCGGT;
CTACGTCCCTGCCCTTT;
GAACCTGCGGAAGGATC;
GTGTTCGGATCGCGGCG
4 : 6 0.0101 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
#513 ATCTTTGAAATTTCATC;
TACGTGGAGGCATCCCT;
TGGGGATAGATCATTGC;
TTGAGGCAATAACAGGT
4 : 7 0.0139 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#811 ATCTTTGAAATTTCATC;
TACGTGGAGGCATCCCT;
TGGGGATAGATCATTGC;
TTGAGGCAATAACAGGT
4 : 7 0.0139 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
#58 AGTGGCAGCCATTGTAA;
CAAAATGGCTGCAAAAA;
CTTATTTACAATGGCTG
3 : 2 0.0166 AT1G07980.1 | Symbols: | histone-like transcription factor (CBF/NF-Y) family protein | chr1:2473162-2474924 REVERSE 0 2
#476 AAGGCTGAAACTTAAAG;
AGGGATCAGCGGATGTT;
TTACCAGGTCCAGACAT
3 : 2 0.0166 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#527 CAGGAGCGTATCGCCGA;
GGCGCTGTTACTTTGAA;
GGTCGGCTTGTCCCTTC;
TTGGTCGGCTTGTCCCT
3 : 2 0.0166 AT2G01010.1 | Symbols: | rRNA | chr2:3706-5513 FORWARD 0 1
#772 AAGGCTGAAACTTAAAG;
AGGGATCAGCGGATGTT;
TTACCAGGTCCAGACAT
3 : 2 0.0166 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
#825 CAGGAGCGTATCGCCGA;
GGCGCTGTTACTTTGAA;
GGTCGGCTTGTCCCTTC;
TTGGTCGGCTTGTCCCT
3 : 2 0.0166 AT3G41768.1 | Symbols: | rRNA | chr3:14208663-14210470 FORWARD 0 1
  Prev Page     Next Page     Page No. 1 / Total 2 Pages , 44 Records



Session Summary        
Users Input
Number of small RNAs submitted by user 4427,   download original FASTA file
Number of valid small RNAs after pre-processing 4427,   download processed FASTA file and LOG file
transcript/genomic library chosen by user Arabidopsis thaliana TAIR7, cDNA, released 04/25/2007
Number of phase-initiators submitted by user 217,   download original FASTA file
Number of valid phase-initiator sequences after pre-processing 166,   download processed FASTA file and LOG file
Mapping small RNAs onto transcript/genomic sequences
Number of total hits during mapping 1347
Number of small RNAs having hits 586
Number of transcript/genomic sequences having hits 726
Clustering phased small RNAs
Number of all phased small RNA clusters (having at least 2 phased small RNAs) 159
Number of transcript/genomic sequences associated with the phased small RNA clusters 29
Identifying cleavage site
Number of phased small RNA clusters with valid cleavage sites directed by phase-initiators 7