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List view: phased small RNA clusters [#Session ID: 1208299162650624]

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Cluster ID Phased small RNA(s) # of hit position
[phased:non-phased]
P-value Matched transcript Transcript description # of cleavage sites guided by input phase-initiator # of complementary regions
#6019 AAAGCTTCAGAAGCAGT;
AACGGATTATGTAAGAG;
ACGGATTATGTAAGAGA;
AGAGGATGTCAACCAGA;
ATATTGATTTGGCTTTG;
ATGGGATATAAACCTGA;
CGGATTATGTAAGAGAG;
CTACGGTACCATAAGTA;
CTCAAAGCCAAATCAAT;
GAGGATGTCAACCAGAT;
GATATTGATTTGGCTTT;
GGAAAATAGAGGCTGAT;
TACTTATGGTACCGTAG;
TAGTTGATCAAATGGTT;
TCAAAGCCAAATCAATA;
TCTCCATCTTCTTTAAC;
TGATATTGATTTGGCTT;
TTAGTTGATCAAATGGT;
TTGTTAAAGAAGATGGA;
TTTACATTCACAACTCT;
TTTGTTAAAGAAGATGG
13 : 7 8.732e-13 AT1G62910.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23302722-23306827 FORWARD 1 28
#21976 AAACTAGAAAAAGCATT;
AAATGTTATTTTCTACT;
AACTTTTGCATATCCTA;
AAGTCCAACATAGCGTA;
AATGTGAACATATTCAA;
ACGATATCTTCCATTTC;
AGAAATGGAAGATATCG;
ATATTTGTAGTAATGGC;
ATGAACAGTTGATGATA;
ATGATATTTGTAGTAAT;
ATTTCCTAAGATCCAAT;
ATTTTCTAAGATCTTAT;
CCATTACTACAAATATC;
CGCTATGTTGGACTTAG;
CGCTATGTTGGACTTAG;
CTAAGTCCAACATAGCG;
CTAAGTCCAACATAGCG;
GAACGCTATGTTGGACT;
GAGAAATGGAAGATATC;
TACGCTATGTTGGACTT;
TATCCTTGAATATGTTC;
TCACGATATCTTCCATT;
TCCAATGCTTTTTCTAG;
TCGCCATTACTACAAAT;
TCTAAGTCCAACATAGC;
TGAACAGTTGATGATAC;
TGATATTTGTAGTAATG;
TTCGCCATTACTACAAA;
TTCTAAGTCCAACATAG;
TTTTAAGTCTAACATAG;
TTTTGCATATCCTAGAA
18 : 38 2.189e-12 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#6162 AAAGCTTCAGAAGCAGT;
AACGGATTATGTAAGAG;
ACGGATTATGTAAGAGA;
AGAGGATGTCAACCAGA;
ATATTGATTTGGCTTTG;
CGGATTATGTAAGAGAG;
CTACGGTACCATAAGTA;
CTCAAAGCCAAATCAAT;
GAGGATGTCAACCAGAT;
GATATTGATTTGGCTTT;
GGAAAATAGAGGCTGAT;
TACTTATGGTACCGTAG;
TAGTTGATCAAATGGTT;
TCAAAGCCAAATCAATA;
TCTCCATCTTCTTTAAC;
TGATATTGATTTGGCTT;
TTAGTTGATCAAATGGT;
TTGATGGTCTTTGCAAA;
TTGTTAAAGAAGATGGA;
TTTACATTCACAACTCT;
TTTGTTAAAGAAGATGG
13 : 9 4.860e-12 AT1G62910.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23302722-23306827 FORWARD 1 28
#21948 AAACTAGAAAAAGCATT;
AATGACTCATTCGCTTG;
AATGATATTTGTAGTAA;
ACAAGCGAATGAGTCAT;
ACGATATCTTCCATTTC;
AGAAATGGAAGATATCG;
ATATTTGTAGTAATGGC;
ATGATATTTGTAGTAAT;
ATTCTAAGTCCAACATA;
ATTTCCTAAGATCCAAT;
ATTTTCTAAGATCTTAT;
CCATTACTACAAATATC;
CGCTATGTTGGACTTAG;
CGCTATGTTGGACTTAG;
CTAAGTCCAACATAGCG;
CTAAGTCCAACATAGCG;
GAACGCTATGTTGGACT;
GAGAAATGGAAGATATC;
TACGCTATGTTGGACTT;
TATCCTTGAATATGTTC;
TCACGATATCTTCCATT;
TCCAATGCTTTTTCTAG;
TCCTAAGTCCAACATAG;
TCGCCATTACTACAAAT;
TCTAAGTCCAACATAGC;
TGATATTTGTAGTAATG;
TTCTAAGTCCAACATAG;
TTTTAAGTCTAACATAG;
TTTTCTAAGATCTTATC;
TTTTGCATATCCTAGAA
17 : 34 1.091e-11 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#21977 AAACTAGAAAAAGCATT;
AAATGTTATTTTCTACT;
AACAGTTGATGATACAA;
AACTTTTGCATATCCTA;
AAGTCCAACATAGCGTA;
AATGTGAACATATTCAA;
ACAGTTGATGATACAAT;
ACGATATCTTCCATTTC;
AGAAATGGAAGATATCG;
ATATTTGTAGTAATGGC;
ATGAACAGTTGATGATA;
ATGATATTTGTAGTAAT;
CCATTACTACAAATATC;
CGCTATGTTGGACTTAG;
CTAAGTCCAACATAGCG;
CTGAAATATGTTTTGGT;
GAAATATGTTTTGGTTA;
GAGAAATGGAAGATATC;
TACGCTATGTTGGACTT;
TATATGCAAAATAAAAA;
TATCCTTGAATATGTTC;
TCACGATATCTTCCATT;
TCCAATGCTTTTTCTAG;
TCGCCATTACTACAAAT;
TGAACAGTTGATGATAC;
TGATATTTGTAGTAATG;
TTCGCCATTACTACAAA;
TTCTTTAAAATTGTTTC;
TTTCTTTAAAATTGTTT;
TTTTGCATATCCTAGAA
16 : 28 2.049e-11 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#21992 AAACTAGAAAAAGCATT;
AAATGTTATTTTCTACT;
AACAGTTGATGATACAA;
AACTTTTGCATATCCTA;
AAGTCCAACATAGCGTA;
AATGTGAACATATTCAA;
ACAGTTGATGATACAAT;
ACGATATCTTCCATTTC;
AGAAATGGAAGATATCG;
ATATTTGTAGTAATGGC;
ATGAACAGTTGATGATA;
ATGATATTTGTAGTAAT;
CCATTACTACAAATATC;
CGCTATGTTGGACTTAG;
CTAAGTCCAACATAGCG;
CTGAAATATGTTTTGGT;
GAAATATGTTTTGGTTA;
GAGAAATGGAAGATATC;
TACGCTATGTTGGACTT;
TATATGCAAAATAAAAA;
TATCCTTGAATATGTTC;
TCACGATATCTTCCATT;
TCCAATGCTTTTTCTAG;
TCGCCATTACTACAAAT;
TGAACAGTTGATGATAC;
TGATATTTGTAGTAATG;
TTCGCCATTACTACAAA;
TTCTTTAAAATTGTTTC;
TTTCTTTAAAATTGTTT;
TTTTGCATATCCTAGAA
16 : 28 2.049e-11 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#21944 AAACTAGAAAAAGCATT;
AATGACTCATTCGCTTG;
AATGATATTTGTAGTAA;
ACAAGCGAATGAGTCAT;
ACGATATCTTCCATTTC;
AGAAATGGAAGATATCG;
ATGATATTTGTAGTAAT;
ATTACTACAAATATCAT;
ATTCTAAGTCCAACATA;
ATTTCCTAAGATCCAAT;
ATTTTCTAAGATCTTAT;
CCATTACTACAAATATC;
CGCTATGTTGGACTTAG;
CGCTATGTTGGACTTAG;
CTAAGTCCAACATAGCG;
CTAAGTCCAACATAGCG;
GAGAAATGGAAGATATC;
TACAAGCGAATGAGTCA;
TACGCTATGTTGGACTT;
TATCCTTGAATATGTTC;
TCACGATATCTTCCATT;
TCCAATGCTTTTTCTAG;
TCCTAAGTCCAACATAG;
TCTAAGTCCAACATAGC;
TGATATTTGTAGTAATG;
TTCTAAGTCCAACATAG;
TTTTAAGTCTAACATAG;
TTTTCTAAGATCTTATC;
TTTTGCATATCCTAGAA
17 : 36 2.230e-11 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#21991 AAACTAGAAAAAGCATT;
AATGACTCATTCGCTTG;
AATGATATTTGTAGTAA;
ACAAGCGAATGAGTCAT;
ACGATATCTTCCATTTC;
AGAAATGGAAGATATCG;
ATGATATTTGTAGTAAT;
ATTACTACAAATATCAT;
ATTCTAAGTCCAACATA;
ATTTCCTAAGATCCAAT;
ATTTTCTAAGATCTTAT;
CCATTACTACAAATATC;
CGCTATGTTGGACTTAG;
CGCTATGTTGGACTTAG;
CTAAGTCCAACATAGCG;
CTAAGTCCAACATAGCG;
GAGAAATGGAAGATATC;
TACAAGCGAATGAGTCA;
TACGCTATGTTGGACTT;
TATCCTTGAATATGTTC;
TCACGATATCTTCCATT;
TCCAATGCTTTTTCTAG;
TCCTAAGTCCAACATAG;
TCTAAGTCCAACATAGC;
TGATATTTGTAGTAATG;
TTCTAAGTCCAACATAG;
TTTTAAGTCTAACATAG;
TTTTCTAAGATCTTATC;
TTTTGCATATCCTAGAA
17 : 36 2.230e-11 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#30728 AAAGCTCGAACCCTTGG;
AATGTGATATTTGTTTT;
ACTCTCCAAGGGTTCGA;
AGCTAGTTTTCAAATAT;
AGCTCGAACCCTTGGAG;
AGGTGCTTTGAATGGTA;
ATAATATAAACTGTTAG;
ATAGTTATCCGTAATTA;
ATATCTAACTAGATGAA;
ATCGAAAATCTAGATTA;
ATCTAACTAGATGAATG;
ATGGTAGTCCAACAATA;
ATTCATCTAGTTAGATA;
ATTTGGGATGTGCTAAA;
CATATCTAACTAGATGA;
CCTAACAGTTTATATTA;
CTAACAGTTTATATTAT;
CTAATTACGGATAACTA;
CTAGTTTTCAAATATAA;
CTTATATTTGAAAACTA;
GATTTGGGATGTGCTAA;
GGTGCTTTGAATGGTAA;
GTGCTTTGAATGGTAAT;
GTTATCCGTAATTAGTG;
TAAATGTGATATTTGTT;
TAACAGTTTATATTATG;
TAGATTTTTTGAGACAA;
TATCGAAAATCTAGATT;
TATCTAACTAGATGAAT;
TCACTAATTACGGATAA;
TCATTACCATTCAAAGC;
TCCTAAAACAAATATCA;
TCTAAAAATAGATATAT;
TCTAATCTAGATTTTCG;
TCTCCAAGGGTTCGAGC;
TCTTATATTTGAAAACT;
TGCTTTGAATGGTAATG;
TGGTAGATGCAACTCTT;
TGGTAGTCCAACAATAG;
TGTCTCAAAAAATCTAT;
TTATATTTGAAAACTAG;
TTCATCTAGTTAGATAT;
TTGGGATGTGCTAAAAC;
TTTGGGATGTGCTAAAA
22 : 107 4.373e-11 AT3G06435.1 | Symbols: | unknown protein | chr3:1969127-1970790 REVERSE 0 1
#21974 AAACTAGAAAAAGCATT;
AAATGTTATTTTCTACT;
AATGAACAGTTGATGAT;
AATGATATTTGTAGTAA;
ACGATATCTTCCATTTC;
AGAAATGGAAGATATCG;
ATGATATTTGTAGTAAT;
ATTACTACAAATATCAT;
ATTCTAAGTCCAACATA;
ATTTCCTAAGATCCAAT;
ATTTTCTAAGATCTTAT;
CCATTACTACAAATATC;
CGCTATGTTGGACTTAG;
CGCTATGTTGGACTTAG;
CTAAGTCCAACATAGCG;
CTAAGTCCAACATAGCG;
GAGAAATGGAAGATATC;
TACGCTATGTTGGACTT;
TATCCTTGAATATGTTC;
TCACGATATCTTCCATT;
TCCAATGCTTTTTCTAG;
TCCTAAGTCCAACATAG;
TCTAAGTCCAACATAGC;
TGATATTTGTAGTAATG;
TTCTAAGTCCAACATAG;
TTTTAAGTCTAACATAG;
TTTTCTAAGATCTTATC;
TTTTGCATATCCTAGAA
17 : 40 8.457e-11 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#22000 AAACTAGAAAAAGCATT;
AAATGTTATTTTCTACT;
AATGAACAGTTGATGAT;
AATGATATTTGTAGTAA;
ACGATATCTTCCATTTC;
AGAAATGGAAGATATCG;
ATGATATTTGTAGTAAT;
ATTACTACAAATATCAT;
ATTCTAAGTCCAACATA;
ATTTCCTAAGATCCAAT;
ATTTTCTAAGATCTTAT;
CCATTACTACAAATATC;
CGCTATGTTGGACTTAG;
CGCTATGTTGGACTTAG;
CTAAGTCCAACATAGCG;
CTAAGTCCAACATAGCG;
GAGAAATGGAAGATATC;
TACGCTATGTTGGACTT;
TATCCTTGAATATGTTC;
TCACGATATCTTCCATT;
TCCAATGCTTTTTCTAG;
TCCTAAGTCCAACATAG;
TCTAAGTCCAACATAGC;
TGATATTTGTAGTAATG;
TTCTAAGTCCAACATAG;
TTTTAAGTCTAACATAG;
TTTTCTAAGATCTTATC;
TTTTGCATATCCTAGAA
17 : 40 8.457e-11 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#5964 AAAGCTTCAGAAGCAGT;
AACATATGGATGATGCA;
AACGGATTATGTAAGAG;
ACATATGGATGATGCAC;
ACGGATTATGTAAGAGA;
AGAGGATGTCAACCAGA;
ATATTGATTTGGCTTTG;
CGGATTATGTAAGAGAG;
CTACGGTACCATAAGTA;
CTCAAAGCCAAATCAAT;
GAGGATGTCAACCAGAT;
GATATTGATTTGGCTTT;
GGAAAATAGAGGCTGAT;
TACTTATGGTACCGTAG;
TAGTTGATCAAATGGTT;
TCAAAGCCAAATCAATA;
TCTCCATCTTCTTTAAC;
TGATATTGATTTGGCTT;
TTAGTTGATCAAATGGT;
TTGATGGTCTTTGCAAA;
TTGTTAAAGAAGATGGA;
TTTGTTAAAGAAGATGG
13 : 14 1.419e-10 AT1G62910.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23302722-23306827 FORWARD 1 28
#1817 AAAGCTTCAGAAGCAGT;
AACGGATTATGTAAGAG;
ACGGATTATGTAAGAGA;
AGAGGATGTCAACCAGA;
ATGGGATATAAACCTGA;
CGGATTATGTAAGAGAG;
CTACGGTACCATAAGTA;
GAGGATGTCAACCAGAT;
GATATTGATTTGGCTTT;
GCTCAACAAGATGGAAG;
TACTTATGGTACCGTAG;
TAGTTGATCAAATGGTT;
TGATATTGATTTGGCTT;
TGCTCAACAAGATGGAA;
TTAAAGCCAAATCAATA;
TTAGTTGATCAAATGGT;
TTTACATTCACAACTCT
11 : 6 1.687e-10 AT1G63150.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23423061-23425244 FORWARD 1 15
#30569 AAAGCTCGAACCCTTGG;
AATGTGATATTTGTTTT;
ACTCTCCAAGGGTTCGA;
AGCCTATTGTTGGACTA;
AGCTAGTTTTCAAATAT;
AGCTCGAACCCTTGGAG;
ATAATATAAACTGTTAG;
ATAGTTATCCGTAATTA;
ATCGAAAATCTAGATTA;
ATGGTAGTCCAACAATA;
ATTTGGGATGTGCTAAA;
CATATCTAACTAGATGA;
CCTAACAGTTTATATTA;
CCTATTGTTGGACTACC;
CTAACAGTTTATATTAT;
CTAATTACGGATAACTA;
CTAGTTTTCAAATATAA;
CTTATATTTGAAAACTA;
GATTTGGGATGTGCTAA;
GCCTATTGTTGGACTAC;
GGTGCTTTGAATGGTAA;
GTGCTTTGAATGGTAAT;
GTTATCCGTAATTAGTG;
TAAATGTGATATTTGTT;
TAACAGTTTATATTATG;
TAGATTTTTTGAGACAA;
TATCGAAAATCTAGATT;
TCACTAATTACGGATAA;
TCATAATATAAACTGTT;
TCATTACCATTCAAAGC;
TCCTAAAACAAATATCA;
TCTAAAAATAGATATAT;
TCTAATCTAGATTTTCG;
TCTCCAAGGGTTCGAGC;
TCTTATATTTGAAAACT;
TGCTTTGAATGGTAATG;
TGGTAGTCCAACAATAG;
TGTCTCAAAAAATCTAT;
TTATATTTGAAAACTAG;
TTGGGATGTGCTAAAAC;
TTTGGGATGTGCTAAAA
21 : 94 1.827e-10 AT3G06435.1 | Symbols: | unknown protein | chr3:1969127-1970790 REVERSE 0 1
#30844 AAAGCTCGAACCCTTGG;
AATGTGATATTTGTTTT;
ACTCTCCAAGGGTTCGA;
AGCTAGTTTTCAAATAT;
AGCTCGAACCCTTGGAG;
AGGTGCTTTGAATGGTA;
ATAATATAAACTGTTAG;
ATAGTTATCCGTAATTA;
ATATCTAACTAGATGAA;
ATCGAAAATCTAGATTA;
ATGGTAGTCCAACAATA;
ATTTGGGATGTGCTAAA;
CATATCTAACTAGATGA;
CCTAACAGTTTATATTA;
CCTATTGTTGGACTACC;
CTAACAGTTTATATTAT;
CTAATTACGGATAACTA;
CTAGTTTTCAAATATAA;
CTATTGTTGGACTACCA;
CTCGAACCCTTGGAGAG;
CTTATATTTGAAAACTA;
GATGGTAGTCCAACAAT;
GATTTGGGATGTGCTAA;
GCCTATTGTTGGACTAC;
GGTGCTTTGAATGGTAA;
GTGCTTTGAATGGTAAT;
TAATTACGGATAACTAT;
TAGATTTTTTGAGACAA;
TATCGAAAATCTAGATT;
TCACTAATTACGGATAA;
TCATAATATAAACTGTT;
TCATTACCATTCAAAGC;
TCCTAAAACAAATATCA;
TCTAAAAATAGATATAT;
TCTAATCTAGATTTTCG;
TCTCCAAGGGTTCGAGC;
TCTTATATTTGAAAACT;
TGGTAGTCCAACAATAG;
TGTCTCAAAAAATCTAT;
TTATATCGAAAATCTAG;
TTATATTTGAAAACTAG;
TTTGGGATGTGCTAAAA
21 : 94 1.827e-10 AT3G06435.1 | Symbols: | unknown protein | chr3:1969127-1970790 REVERSE 0 1
#31097 AAAGCTCGAACCCTTGG;
AATGTGATATTTGTTTT;
ACTCTCCAAGGGTTCGA;
AGCTAGTTTTCAAATAT;
AGCTCGAACCCTTGGAG;
AGGTGCTTTGAATGGTA;
ATAATATAAACTGTTAG;
ATAGTTATCCGTAATTA;
ATATCTAACTAGATGAA;
ATCGAAAATCTAGATTA;
ATGGTAGTCCAACAATA;
ATTTGGGATGTGCTAAA;
CATATCTAACTAGATGA;
CCTAACAGTTTATATTA;
CCTATTGTTGGACTACC;
CTAACAGTTTATATTAT;
CTAATTACGGATAACTA;
CTAGTTTTCAAATATAA;
CTATTGTTGGACTACCA;
CTCGAACCCTTGGAGAG;
CTTATATTTGAAAACTA;
GATGGTAGTCCAACAAT;
GATTTGGGATGTGCTAA;
GCCTATTGTTGGACTAC;
GGTGCTTTGAATGGTAA;
GTGCTTTGAATGGTAAT;
TAATTACGGATAACTAT;
TAGATTTTTTGAGACAA;
TATCGAAAATCTAGATT;
TCACTAATTACGGATAA;
TCATAATATAAACTGTT;
TCATTACCATTCAAAGC;
TCCTAAAACAAATATCA;
TCTAAAAATAGATATAT;
TCTAATCTAGATTTTCG;
TCTCCAAGGGTTCGAGC;
TCTTATATTTGAAAACT;
TGGTAGTCCAACAATAG;
TGTCTCAAAAAATCTAT;
TTATATCGAAAATCTAG;
TTATATTTGAAAACTAG;
TTTGGGATGTGCTAAAA
21 : 94 1.827e-10 AT3G06435.1 | Symbols: | unknown protein | chr3:1969127-1970790 REVERSE 0 1
#30505 AAAGCTCGAACCCTTGG;
AATGTGATATTTGTTTT;
AATGTTTGGGAGTAGCC;
ACTCTCCAAGGGTTCGA;
AGCCTATTGTTGGACTA;
AGCTAGTTTTCAAATAT;
AGCTCGAACCCTTGGAG;
ATAATATAAACTGTTAG;
ATAGCCTATTGTTGGAC;
ATAGTTATCCGTAATTA;
ATCGAAAATCTAGATTA;
ATGGTAGTCCAACAATA;
ATTTGGGATGTGCTAAA;
CCTAACAGTTTATATTA;
CCTATTGTTGGACTACC;
CTAACAGTTTATATTAT;
CTAATTACGGATAACTA;
CTAGTTTTCAAATATAA;
CTTATATTTGAAAACTA;
GATTTGGGATGTGCTAA;
GCCTATTGTTGGACTAC;
GTTATCCGTAATTAGTG;
TAAATGTGATATTTGTT;
TAACAGTTTATATTATG;
TAGATTTTTTGAGACAA;
TAGCCTATTGTTGGACT;
TATCGAAAATCTAGATT;
TCACTAATTACGGATAA;
TCATAATATAAACTGTT;
TCATTACCATTCAAAGC;
TCCTAAAACAAATATCA;
TCTAAAAATAGATATAT;
TCTAATCTAGATTTTCG;
TCTCCAAGGGTTCGAGC;
TCTTATATTTGAAAACT;
TGGCTACTCCCAAACAT;
TGGTAGTCCAACAATAG;
TGTCTCAAAAAATCTAT;
TGTTTGGGAGTAGCCAT;
TTATATTTGAAAACTAG;
TTGGGATGTGCTAAAAC;
TTTGGGATGTGCTAAAA
21 : 96 2.654e-10 AT3G06435.1 | Symbols: | unknown protein | chr3:1969127-1970790 REVERSE 0 1
#30845 AAAAGTCTCTTGTGAAT;
AATAGGCAGAACCCAAA;
ACTCTCAAAATGATTGT;
ATCCAAATAACAAAATG;
ATCCTGGGCCTACTAAT;
ATTTCAAAAACAAAGAG;
CAAAAACAAAGAGAGTT;
CAAATAACAAAATGAGC;
CAAATACAGCTGAGCAG;
CAGCCATTTGGGTTCTG;
CATTTGGGTTCTGCCTA;
CCAGATATTTATACATG;
CCAGCAAATACAGCTGA;
CCATTTGGGTTCTGCCT;
CCTGGGCCTACTAATAG;
CTCATTTTGTTATTTGG;
CTCTCTTTGTTTTTGAA;
CTGCTCAGCTGTATTTG;
CTGGGCCTACTAATAGG;
GCCATTTGGGTTCTGCC;
GCCCTATTAGTAGGCCC;
GCTCATTTTGTTATTTG;
GCTGCTCAGCTGTATTT;
TAGGCAGAACCCAAATG;
TATCCTGGGCCTACTAA;
TATTTAAGCATGACTTA;
TCAAAATGATTGTCAGA;
TCAAATTCTATTAGATT;
TCAGTATGATCCCAAAA;
TCATTTTGTTATTTGGA;
TCCTGGGCCTACTAATA;
TCTCAAAATGATTGTCA;
TCTGACAATCATTTTGA;
TGACAATCATTTTGAGA;
TGCTCAGCTGTATTTGC;
TGCTGCTCAGCTGTATT;
TTCAAAAACAAAGAGAG;
TTGCATGTATAAATATC;
TTTTCTACTTTTTCTAC;
TTTTGGGATCATACTGA;
TTTTTCTACTTTTTCTA
20 : 80 3.019e-10 AT3G06435.1 | Symbols: | unknown protein | chr3:1969127-1970790 REVERSE 0 1
#30780 AAAAGTCTCTTGTGAAT;
AATAGGCAGAACCCAAA;
ACTCTCAAAATGATTGT;
ATCCAAATAACAAAATG;
ATCCAGATATTTATACA;
ATCCTGGGCCTACTAAT;
ATTTCAAAAACAAAGAG;
CAAAAACAAAGAGAGTT;
CAAATACAGCTGAGCAG;
CAGCCATTTGGGTTCTG;
CATTTGGGTTCTGCCTA;
CCAGATATTTATACATG;
CCAGCAAATACAGCTGA;
CCATTTGGGTTCTGCCT;
CCTGGGCCTACTAATAG;
CTCTCTTTGTTTTTGAA;
CTGCTCAGCTGTATTTG;
CTGGGCCTACTAATAGG;
GCCATTTGGGTTCTGCC;
GCCCTATTAGTAGGCCC;
TAGGCAGAACCCAAATG;
TATCCTGGGCCTACTAA;
TATTTAAGCATGACTTA;
TCAAAATGATTGTCAGA;
TCAAATTCTATTAGATT;
TCAGTATGATCCCAAAA;
TCCAGATATTTATACAT;
TCCTGGGCCTACTAATA;
TCTCAAAATGATTGTCA;
TCTGACAATCATTTTGA;
TGACAATCATTTTGAGA;
TGCTCAGCTGTATTTGC;
TTCAAAAACAAAGAGAG;
TTGCATGTATAAATATC;
TTTAAGCATGACTTAGA;
TTTTCTACTTTTTCTAC;
TTTTGGGATCATACTGA;
TTTTTCTACTTTTTCTA
19 : 67 3.652e-10 AT3G06435.1 | Symbols: | unknown protein | chr3:1969127-1970790 REVERSE 0 1
#21951 AAACTAGAAAAAGCATT;
AAATGTTATTTTCTACT;
AACAGTTGATGATACAA;
AATGAACAGTTGATGAT;
AATGATATTTGTAGTAA;
ACGATATCTTCCATTTC;
AGAAATGGAAGATATCG;
ATATTTGTAGTAATGGC;
ATGAACAGTTGATGATA;
ATGATATTTGTAGTAAT;
CCATTACTACAAATATC;
GAAATATGTTTTGGTTA;
TACGCTATGTTGGACTT;
TATATGCAAAATAAAAA;
TATCCTTGAATATGTTC;
TCACGATATCTTCCATT;
TCCAATGCTTTTTCTAG;
TCGCCATTACTACAAAT;
TGAACAGTTGATGATAC;
TGATATTTGTAGTAATG;
TGCAAGGCTTGTAATGG;
TTTCTTTAAAATTGTTT;
TTTTGCATATCCTAGAA
15 : 31 1.027e-9 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#30762 AAAAGGCCAATAAGTTC;
AAACGTTGGATATATGC;
AACAAAATAAGGAATGC;
AACGTTGGATATATGCT;
AAGCATATATCCAACGT;
AATGCCGTCGAAAATGA;
ACGTTGACAATTCAGTA;
ACGTTGGATATATGCTT;
ACTATGCTGCCATCTTG;
ACTCATTTTCGACGGCA;
AGAACTTATTGGCCTTT;
AGAAGCATTCCTTATTT;
AGAGAACTTATTGGCCT;
AGCATATATCCAACGTT;
ATAAAGCATATATCCAA;
ATAGGGGAACTTTTTTG;
ATATAACGTTGTTTACC;
ATCTTCTTCTTTTTATA;
ATGCCGTCGAAAATGAG;
ATGCTGCCATCTTGAGA;
CCCTACTGAATTGTCAA;
CCTACTGAATTGTCAAC;
CTACAAAAAAGTTCCCC;
CTACTGAATTGTCAACG;
CTATGCTGCCATCTTGA;
CTCAAGATGGCAGCATA;
CTCATTTTCGACGGCAT;
CTGATTCATTGTCCATT;
CTTCTGTATTCTTGAGG;
GAAGCATTCCTTATTTT;
GACCTCAAGAATACAGA;
GACGTTGACAATTCAGT;
GATTCATTGTCCATTGA;
GTAATGCCGTCGAAAAT;
TAAACAACGTTATATAT;
TAAACGTTGGATATATG;
TAAAGCATATATCCAAC;
TAATGCCGTCGAAAATG;
TACAAAAAAGTTCCCCT;
TACTATGCTGCCATCTT;
TACTCATTTTCGACGGC;
TACTGAATTGTCAACGT;
TAGGGGAACTTTTTTGT;
TATGCTGCCATCTTGAG;
TCAAGAATACAGAAGAA;
TCAAGATGGCAGCATAG;
TCAATGGACAATGAATC;
TCATTTTCGACGGCATT;
TCCCTACTGAATTGTCA;
TCGTCAATGGACAATGA;
TCTCAAGATGGCAGCAT;
TGCCGTCGAAAATGAGT;
TGTAAGGATACGAATTA;
TTGTAAGGATACGAATT
22 : 128 1.374e-9 AT3G06435.1 | Symbols: | unknown protein | chr3:1969127-1970790 REVERSE 0 1
#31035 AAAAGGCCAATAAGTTC;
AAACGTTGGATATATGC;
AACAAAATAAGGAATGC;
AACGTTGGATATATGCT;
AAGCATATATCCAACGT;
AATGCCGTCGAAAATGA;
ACGTTGACAATTCAGTA;
ACGTTGGATATATGCTT;
ACTATGCTGCCATCTTG;
ACTCATTTTCGACGGCA;
AGAACTTATTGGCCTTT;
AGAAGCATTCCTTATTT;
AGAGAACTTATTGGCCT;
AGCATATATCCAACGTT;
ATAAAGCATATATCCAA;
ATAGGGGAACTTTTTTG;
ATATAACGTTGTTTACC;
ATCTTCTTCTTTTTATA;
ATGCCGTCGAAAATGAG;
ATGCTGCCATCTTGAGA;
CCCTACTGAATTGTCAA;
CCTACTGAATTGTCAAC;
CTACAAAAAAGTTCCCC;
CTACTGAATTGTCAACG;
CTATGCTGCCATCTTGA;
CTCAAGATGGCAGCATA;
CTCATTTTCGACGGCAT;
CTGATTCATTGTCCATT;
CTTCTGTATTCTTGAGG;
GAAGCATTCCTTATTTT;
GACCTCAAGAATACAGA;
GACGTTGACAATTCAGT;
GATTCATTGTCCATTGA;
GTAATGCCGTCGAAAAT;
TAAACAACGTTATATAT;
TAAACGTTGGATATATG;
TAAAGCATATATCCAAC;
TAATGCCGTCGAAAATG;
TACAAAAAAGTTCCCCT;
TACTATGCTGCCATCTT;
TACTCATTTTCGACGGC;
TACTGAATTGTCAACGT;
TAGGGGAACTTTTTTGT;
TATGCTGCCATCTTGAG;
TCAAGAATACAGAAGAA;
TCAAGATGGCAGCATAG;
TCAATGGACAATGAATC;
TCATTTTCGACGGCATT;
TCCCTACTGAATTGTCA;
TCGTCAATGGACAATGA;
TCTCAAGATGGCAGCAT;
TGCCGTCGAAAATGAGT;
TGTAAGGATACGAATTA;
TTGTAAGGATACGAATT
22 : 128 1.374e-9 AT3G06435.1 | Symbols: | unknown protein | chr3:1969127-1970790 REVERSE 0 1
#21956 AAATGTTATTTTCTACT;
AACAGTTGATGATACAA;
AACTTTTGCATATCCTA;
AATGTGAACATATTCAA;
ACAGTTGATGATACAAT;
ATATTTGTAGTAATGGC;
CAACACCCATTACAAGC;
CTGAAATATGTTTTGGT;
GAAATATGTTTTGGTTA;
GGCTTGTAATGGGTGTT;
TATATGCAAAATAAAAA;
TATCCTTGAATATGTTC;
TCCAATGCTTTTTCTAG;
TCGCCATTACTACAAAT;
TGAACAGTTGATGATAC;
TTCGCCATTACTACAAA;
TTCTTTAAAATTGTTTC;
TTTCGCCATTACTACAA;
TTTCTTTAAAATTGTTT;
TTTTGCATATCCTAGAA
13 : 19 1.839e-9 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 2 9
#22002 AAATGTTATTTTCTACT;
AACAGTTGATGATACAA;
AACTTTTGCATATCCTA;
AATGTGAACATATTCAA;
ACAGTTGATGATACAAT;
ATATTTGTAGTAATGGC;
CAACACCCATTACAAGC;
CTGAAATATGTTTTGGT;
GAAATATGTTTTGGTTA;
GGCTTGTAATGGGTGTT;
TATATGCAAAATAAAAA;
TATCCTTGAATATGTTC;
TCCAATGCTTTTTCTAG;
TCGCCATTACTACAAAT;
TGAACAGTTGATGATAC;
TTCGCCATTACTACAAA;
TTCTTTAAAATTGTTTC;
TTTCGCCATTACTACAA;
TTTCTTTAAAATTGTTT;
TTTTGCATATCCTAGAA
13 : 19 1.839e-9 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 2 9
#6149 AACATATGGATGATGCA;
AACGGATTATGTAAGAG;
ACATATGGATGATGCAC;
ACGGATTATGTAAGAGA;
AGAGGATGTCAACCAGA;
ATATTGATTTGGCTTTG;
ATTGAGTGCATCATCCA;
CGGATTATGTAAGAGAG;
CTACGGTACCATAAGTA;
CTCAAAGCCAAATCAAT;
GAGGATGTCAACCAGAT;
GATATTGATTTGGCTTT;
GGAAAATAGAGGCTGAT;
TACTTATGGTACCGTAG;
TAGTTGATCAAATGGTT;
TCAAAGCCAAATCAATA;
TCTCCATCTTCTTTAAC;
TGATATTGATTTGGCTT;
TTAGTTGATCAAATGGT;
TTGAGTGCATCATCCAT;
TTGATGGTCTTTGCAAA;
TTGTTAAAGAAGATGGA;
TTTGTTAAAGAAGATGG
13 : 19 1.839e-9 AT1G62910.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23302722-23306827 FORWARD 1 28
#22004 AAACTAGAAAAAGCATT;
AAATGTTATTTTCTACT;
AACAGTTGATGATACAA;
AATGAACAGTTGATGAT;
AATGATATTTGTAGTAA;
ACGATATCTTCCATTTC;
AGAAATGGAAGATATCG;
ATATTTGTAGTAATGGC;
ATGAACAGTTGATGATA;
ATGATATTTGTAGTAAT;
CCATTACTACAAATATC;
CGCTATGTTGGACTTAG;
CTAAGTCCAACATAGCG;
GAAATATGTTTTGGTTA;
GAGAAATGGAAGATATC;
TACGCTATGTTGGACTT;
TATATGCAAAATAAAAA;
TATCCTTGAATATGTTC;
TCACGATATCTTCCATT;
TCCAATGCTTTTTCTAG;
TCGCCATTACTACAAAT;
TCTAAGTCCAACATAGC;
TGAACAGTTGATGATAC;
TGATATTTGTAGTAATG;
TTTCTTTAAAATTGTTT;
TTTTGCATATCCTAGAA
15 : 33 2.020e-9 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 1 9
#30595 AAAGCTCGAACCCTTGG;
AATGTGATATTTGTTTT;
ACTCTCCAAGGGTTCGA;
AGCTAGTTTTCAAATAT;
AGCTCGAACCCTTGGAG;
AGGTGCTTTGAATGGTA;
ATAATATAAACTGTTAG;
ATAGTTATCCGTAATTA;
ATATCTAACTAGATGAA;
ATCGAAAATCTAGATTA;
ATCTAACTAGATGAATG;
ATGGTAGTCCAACAATA;
ATTCATCTAGTTAGATA;
ATTTGGGATGTGCTAAA;
CATATCTAACTAGATGA;
CCTAACAGTTTATATTA;
CTAACAGTTTATATTAT;
CTAATTACGGATAACTA;
CTAGTTTTCAAATATAA;
CTCGAACCCTTGGAGAG;
CTTATATTTGAAAACTA;
GATGGTAGTCCAACAAT;
GATTTGGGATGTGCTAA;
GGTGCTTTGAATGGTAA;
GTGCTTTGAATGGTAAT;
TAATTACGGATAACTAT;
TAGATTTTTTGAGACAA;
TATCGAAAATCTAGATT;
TATCTAACTAGATGAAT;
TCACTAATTACGGATAA;
TCATTACCATTCAAAGC;
TCCTAAAACAAATATCA;
TCTAAAAATAGATATAT;
TCTAACTAGATGAATGT;
TCTAATCTAGATTTTCG;
TCTCCAAGGGTTCGAGC;
TCTTATATTTGAAAACT;
TGAGGTGCTTTGAATGG;
TGTCTCAAAAAATCTAT;
TTATATCGAAAATCTAG;
TTATATTTGAAAACTAG;
TTTGGGATGTGCTAAAA
21 : 108 2.161e-9 AT3G06435.1 | Symbols: | unknown protein | chr3:1969127-1970790 REVERSE 0 1
#22028 AAACTAGAAAAAGCATT;
AATGAACAGTTGATGAT;
AATGATATTTGTAGTAA;
ACGATATCTTCCATTTC;
AGAAATGGAAGATATCG;
ATGAACAGTTGATGATA;
ATGATATTTGTAGTAAT;
ATTACTACAAATATCAT;
ATTCTAAGTCCAACATA;
ATTTCCTAAGATCCAAT;
ATTTTCTAAGATCTTAT;
CCATTACTACAAATATC;
CGCTATGTTGGACTTAG;
CGCTATGTTGGACTTAG;
GAGAAATGGAAGATATC;
GTTTGATTGGATCTTAG;
TATCCTTGAATATGTTC;
TCCAATGCTTTTTCTAG;
TCTAAGTCCAACATAGC;
TGAACAGTTGATGATAC;
TGATATTTGTAGTAATG;
TTAATGAACAGTTGATG;
TTACTACAAATATCATT;
TTATTCTAAGTCCAACA;
TTCTAAGTCCAACATAG;
TTTTAAGTCTAACATAG;
TTTTCTAAGATCTTATC;
TTTTGCATATCCTAGAA
16 : 42 2.346e-9 AT2G27400.1 | Symbols: TAS1A | TAS1A; other RNA | chr2:11728617-11729546 REVERSE 0 9
#1800 AAAGCTTCAGAAGCAGT;
AACGGATTATGTAAGAG;
ACGGATTATGTAAGAGA;
AGAGGATGTCAACCAGA;
CAACAGCAACTTCCACA;
CATGTGGAAGTTGCTGT;
CGGATTATGTAAGAGAG;
CTACGGTACCATAAGTA;
GAGGATGTCAACCAGAT;
GATATTGATTTGGCTTT;
GCTCAACAAGATGGAAG;
TACTTATGGTACCGTAG;
TAGTTGATCAAATGGTT;
TGATATTGATTTGGCTT;
TGCTCAACAAGATGGAA;
TTAAAGCCAAATCAATA;
TTAGTTGATCAAATGGT
11 : 10 3.479e-9 AT1G63150.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23423061-23425244 FORWARD 1 15
#30625 AAAGAGTTGCATCTACC;
AAAGCTCGAACCCTTGG;
AATGTGATATTTGTTTT;
AGCTAGTTTTCAAATAT;
AGCTCGAACCCTTGGAG;
AGGTGCTTTGAATGGTA;
ATAGTTATCCGTAATTA;
ATATCTAACTAGATGAA;
ATCGAAAATCTAGATTA;
ATTCATCTAGTTAGATA;
ATTTGGGATGTGCTAAA;
CATATCTAACTAGATGA;
CCTAACAGTTTATATTA;
CTAGTTTTCAAATATAA;
CTTATATTTGAAAACTA;
GATTTGGGATGTGCTAA;
GCTTTGAATGGTAATGA;
GGTGCTTTGAATGGTAA;
GTGCTTTGAATGGTAAT;
GTTATCCGTAATTAGTG;
TAAATGTGATATTTGTT;
TATCGAAAATCTAGATT;
TATCTAACTAGATGAAT;
TCACTAATTACGGATAA;
TCATCTAGTTAGATATG;
TCATTACCATTCAAAGC;
TCTAAAAATAGATATAT;
TCTAATCTAGATTTTCG;
TCTCCAAGGGTTCGAGC;
TCTTATATTTGAAAACT;
TGCTTTGAATGGTAATG;
TGGTAGATGCAACTCTT;
TGTCTCAAAAAATCTAT;
TTATATTTGAAAACTAG;
TTCATCTAGTTAGATAT;
TTGGGATGTGCTAAAAC;
TTTCTTTATTAGAAATT;
TTTGGGATGTGCTAAAA
20 : 94 4.312e-9 AT3G06435.1 | Symbols: | unknown protein | chr3:1969127-1970790 REVERSE 0 1
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Session Summary        
Users Input
Number of small RNAs submitted by user 176694,   download original FASTA file
Number of valid small RNAs after pre-processing 176694,   download processed FASTA file and LOG file
transcript/genomic library chosen by user Arabidopsis thaliana TAIR7, cDNA, released 04/25/2007
Number of phase-initiators submitted by user 217,   download original FASTA file
Number of valid phase-initiator sequences after pre-processing 166,   download processed FASTA file and LOG file
Mapping small RNAs onto transcript/genomic sequences
Number of total hits during mapping 50738
Number of small RNAs having hits 26371
Number of transcript/genomic sequences having hits 9321
Clustering phased small RNAs
Number of all phased small RNA clusters (having at least 2 phased small RNAs) 19709
Number of transcript/genomic sequences associated with the phased small RNA clusters 1685
Identifying cleavage site
Number of phased small RNA clusters with valid cleavage sites directed by phase-initiators 1521