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List view: phased small RNA clusters [#Session ID: 1208310834292654]
  Prev Page     Next Page     Page No. 1 / Total 31 Pages , 909 Records    
Cluster ID Phased small RNA(s) # of hit position
[phased:non-phased]		 P-value Matched transcript Transcript description # of cleavage sites guided by input phase-initiator # of complementary regions
#6568 CAACACATGTCTTTTCT;
CAGGAACGTCCTCTCTT;
CATAGACTGCCCTCACA;
GCACACGAGTGAGGACA;
GGCACTGGACACATGGA;
GGTCTGTGAGGGCAGTC;
TGTCCTCACTCGTGTGC		 7 : 0 1.416e-8 LOC_Os01g33136.1|12001.m09631|cDNA retrotransposon protein, putative, unclassified 0 1
#6567 CAACACATGTCTTTTCT;
CACCCATCCCAAATTGC;
CAGGAACGTCCTCTCTT;
CATAGACTGCCCTCACA;
GCAATTTGGGATGGGTG;
GCACACGAGTGAGGACA;
GGCACTGGACACATGGA;
GGTCTGTGAGGGCAGTC;
TGTCCTCACTCGTGTGC		 9 : 5 2.377e-8 LOC_Os01g33136.1|12001.m09631|cDNA retrotransposon protein, putative, unclassified 0 1
#95753 AAGTTGTGGCTAACAAT;
AATGGTAAAGTGTGGCT;
ACTTTGCCACAGTTTGC;
CAACAAATTGGGTCCCA;
CTTTGCCACAGTTTGCC;
CTTTTTTGAGCCATTGA;
GCAAACTGTGGCAAAGT;
GCAAGATTCTCTTAGGC;
GTGGCTTGCAACCAAAC;
GTGGGACCCAATTTGTT;
TAAGGTTAGGCAAATTT;
TAATGGTAAAGTGTGGC		 10 : 10 5.220e-8 LOC_Os08g34150.1|12008.m07404|cDNA OsTIL-2 - Oryza sativa Temperature-induced lipocalin-2, expressed 0 0
#74244 AGCCTCTTTCCGGGAGC;
AGCTTGTATTCGTCGAC;
GAGCACAGGAATTGCAT;
GGAGGTGCAGCAGATGG;
GGTCGACGAATACAAGC;
TCCTGCCAAGGGTCGTC;
TCGACGAATACAAGCTG;
TTCCTGCCAAGGGTCGT		 6 : 0 3.293e-7 LOC_Os06g46410.1|12006.m09167|cDNA auxin response factor 6, putative, expressed 0 7
#74253 AGCCTCTTTCCGGGAGC;
AGCTTGTATTCGTCGAC;
GAGCACAGGAATTGCAT;
GGAGGTGCAGCAGATGG;
GGTCGACGAATACAAGC;
TCCTGCCAAGGGTCGTC;
TCGACGAATACAAGCTG;
TTCCTGCCAAGGGTCGT		 6 : 0 3.293e-7 LOC_Os06g46410.2|12006.m091759|cDNA auxin response factor 6, putative, expressed 0 5
#95759 AAGTTGTGGCTAACAAT;
AATGGTAAAGTGTGGCT;
CAACAAATTGGGTCCCA;
CTTTGCCACAGTTTGCC;
GCAAGATTCTCTTAGGC;
GTGGCTTGCAACCAAAC;
GTGGGACCCAATTTGTT;
GTTGTGGCTAACAATTT;
TAAGGTTAGGCAAATTT;
TAATGGTAAAGTGTGGC		 8 : 11 1.254e-5 LOC_Os08g34150.1|12008.m07404|cDNA OsTIL-2 - Oryza sativa Temperature-induced lipocalin-2, expressed 0 0
#137436 AAAGCGTCCTTTAGAAT;
AAGCGTCCTTTAGAATC;
AATCAATTTCGCTCTCT;
ACTTTCTCTGGTGTCTT;
ATCCTTGAGGCGTCTGC;
ATGGTTGCGAAGTCAGG;
CGCTTCATGAACTCCCA;
CTTGAGGCGTCTGCTCC;
GATGGTTGCGAAGTCAG;
GGGAGTTCATGAAGCGG;
GGTTGCGAAGTCAGGTG;
GTACTTTCTCTGGTGTC;
TAATCAATTTCGCTCTC;
TCACGTCCAGTGTTGTT;
TCCTTGAGGCGTCTGCT;
TGCACTGCTTCATGCCT;
TGGGAGTTCATGAAGCG;
TGGTTGCGAAGTCAGGT;
TTGCACTGCTTCATGCC		 9 : 17 1.352e-5 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
#137440 AATCAATTTCGCTCTCT;
ACTTTCTCTGGTGTCTT;
ATGGTTGCGAAGTCAGG;
CAATTTCGCTCTCTGTA;
CTTGAGGCGTCTGCTCC;
CTTTCTCTGGTGTCTTC;
GGGAGTTCATGAAGCGG;
GGTTGCGAAGTCAGGTG;
GTACTTTCTCTGGTGTC;
GTTGCGAAGTCAGGTGC;
TAATCAATTTCGCTCTC;
TATGACCGCTTCATGAA;
TCACGTCCAGTGTTGTT;
TCCTTGAGGCGTCTGCT;
TGCACTGCTTCATGCCT;
TGGGAGTTCATGAAGCG;
TGGTTGCGAAGTCAGGT;
TTGCACTGCTTCATGCC;
TTGCGAAGTCAGGTGCT;
TTTCTCTGGTGTCTTCC		 8 : 12 1.918e-5 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
#137465 AAAGCGTCCTTTAGAAT;
AAGCGTCCTTTAGAATC;
AATCAATTTCGCTCTCT;
ACTTTCTCTGGTGTCTT;
ATCCTTGAGGCGTCTGC;
ATGGTTGCGAAGTCAGG;
CGCTTCATGAACTCCCA;
CTTGAGGCGTCTGCTCC;
GATGGTTGCGAAGTCAG;
GGGAGTTCATGAAGCGG;
GGTTGCGAAGTCAGGTG;
GTACTTTCTCTGGTGTC;
TAATCAATTTCGCTCTC;
TCCTTGAGGCGTCTGCT;
TGAGAGAGTGCACTTTC;
TGCACTGCTTCATGCCT;
TGGGAGTTCATGAAGCG;
TGGTTGCGAAGTCAGGT;
TTGCACTGCTTCATGCC		 9 : 19 2.598e-5 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
#108574 ACCCATAACCGCGGGTA;
AGTTGAGCAATGTTTTT;
CAGAGGTGTACCACTGT;
CCCATAACCGCGGGTAC;
GAGTTGAGCAATGTTTT;
GTAGTGTGAGACTAATC;
GTTGAGCAATGTTTTTC;
TACAGTGGTACACCTCT		 5 : 1 3.481e-5 LOC_Os10g09500.1|12010.m04294|cDNA retrotransposon protein, putative, Ty3-gypsy subclass, expressed 0 4
#61235 ACGTCGTCGCCAAGGCT;
CACGTCGTCGCCAAGGC;
GCGTCTGCCGGTGGCAC;
GGAGCCTTGGCGACGAC;
GGCGGCGCAGGTCATCT;
TGTACTCGACGTCGGTG		 5 : 1 3.481e-5 LOC_Os05g43930.1|12005.m08519|cDNA O-methyltransferase ZRP4, putative, expressed 0 1
#61249 ACGTCGTCGCCAAGGCT;
CACGTCGTCGCCAAGGC;
GCGTCTGCCGGTGGCAC;
GGAGCCTTGGCGACGAC;
GGCGGCGCAGGTCATCT;
TGTACTCGACGTCGGTG		 5 : 1 3.481e-5 LOC_Os05g43940.1|12005.m08520|cDNA O-methyltransferase ZRP4, putative, expressed 0 1
#120170 ATAACCGGGACTAAAGA;
CACCAACCAGGACTAAA;
CGATCTTTAGTCCCGGA;
GGATCTTTAGTCCCGGT;
TATCTTTAGTCCTGGAT		 5 : 1 3.481e-5 LOC_Os11g25780.1|12011.m06499|cDNA octicosapeptide/Phox/Bem1p, putative, expressed 0 1
#33005 CATGTGTGGTGGAGAGA;
CCACCTCATGGGATGGC;
CTTGCTTATTCTAGGAG;
GCATGTGGAGTTTAGTA;
TACGCGTCGAATGGTCC;
TGCCCTCCTAGCCACTT;
TTCAAGTGGCTAGGAGG;
TTCTTTGGAAAATCACA		 8 : 14 4.132e-5 LOC_Os03g53550.1|12003.m10325|cDNA retrotransposon protein, putative, unclassified, expressed 0 0
#137452 AAGCGTCCTTTAGAATC;
AATCAATTTCGCTCTCT;
ACTTTCTCTGGTGTCTT;
CAATTTCGCTCTCTGTA;
CTTGAGGCGTCTGCTCC;
CTTTCTCTGGTGTCTTC;
GAGAGTGCACTTTCTCC;
GGGAGTTCATGAAGCGG;
GGTTGCGAAGTCAGGTG;
GTTGCGAAGTCAGGTGC;
TATGACCGCTTCATGAA;
TGCACTGCTTCATGCCT;
TGGTTGCGAAGTCAGGT;
TTATGACCGCTTCATGA;
TTCTCTGGTGTCTTCCC;
TTGCGAAGTCAGGTGCT;
TTTCTCTGGTGTCTTCC		 9 : 21 4.701e-5 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
#16558 AAACCGCGAGATGAATC;
ACGTCCGATGTGACACC;
AGCACATGTGGGTTACT;
AGCACTTATGGCTAATC;
AGTAACCCACATGTGCT;
TTCCGACATCCGGTCAA;
TTGACCGGATGTCGGAA;
TTTTTCATTCGTGTCCG		 8 : 15 5.854e-5 LOC_Os02g15360.1|12002.m100713|cDNA expressed protein 0 6
#137458 AATCAATTTCGCTCTCT;
ACTTTCTCTGGTGTCTT;
ATCCTTGAGGCGTCTGC;
ATGGTTGCGAAGTCAGG;
CGCTTCATGAACTCCCA;
CTTGAGGCGTCTGCTCC;
GATGGTTGCGAAGTCAG;
GGGAGTTCATGAAGCGG;
GGTTGCGAAGTCAGGTG;
GTACTTTCTCTGGTGTC;
TAATCAATTTCGCTCTC;
TCACGTCCAGTGTTGTT;
TCCTTGAGGCGTCTGCT;
TGCACTGCTTCATGCCT;
TGGGAGTTCATGAAGCG;
TGGTTGCGAAGTCAGGT;
TTGCACTGCTTCATGCC		 8 : 15 5.854e-5 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
#95755 AAGTTGTGGCTAACAAT;
AATGGTAAAGTGTGGCT;
CAACAAATTGGGTCCCA;
CTTTTTTGAGCCATTGA;
GCAAGATTCTCTTAGGC;
GTGGGACCCAATTTGTT;
TAATGGTAAAGTGTGGC		 6 : 5 6.911e-5 LOC_Os08g34150.1|12008.m07404|cDNA OsTIL-2 - Oryza sativa Temperature-induced lipocalin-2, expressed 0 0
#26904 ACACTTTGCCACAGTTT;
ACTTTGCCACAGTTTGC;
CAACAAATTGGGTCCCA;
CACAGTTGTGGCAAGAT;
CTTTTTTGAGCCATTGA;
GCAAACTGTGGCAAAGT;
GTGGGACCCAATTTGTT;
TGACAGGTGTTTGGTTG		 7 : 10 7.950e-5 LOC_Os03g17130.1|12003.m07144|cDNA helix-loop-helix DNA-binding domain containing protein, expressed 0 3
#137437 AAAGCGTCCTTTAGAAT;
AAGCGTCCTTTAGAATC;
AATCAATTTCGCTCTCT;
ACTTTCTCTGGTGTCTT;
ATCCTTGAGGCGTCTGC;
ATGGTTGCGAAGTCAGG;
CTTGAGGCGTCTGCTCC;
CTTTCTCTGGTGTCTTC;
GATGGTTGCGAAGTCAG;
GGGAGTTCATGAAGCGG;
GGTTGCGAAGTCAGGTG;
GTACTTTCTCTGGTGTC;
GTTGCGAAGTCAGGTGC;
TAATCAATTTCGCTCTC;
TCCTTGAGGCGTCTGCT;
TGAGAGAGTGCACTTTC;
TGCACTGCTTCATGCCT;
TGGGAGTTCATGAAGCG;
TGGTTGCGAAGTCAGGT;
TTGCACTGCTTCATGCC		 8 : 16 8.129e-5 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
#74236 AGCTTGTATTCGTCGAC;
GAGCACAGGAATTGCAT;
GGAGGTGCAGCAGATGG;
GGTCGACGAATACAAGC;
TCCTGCCAAGGGTCGTC;
TTCCTGCCAAGGGTCGT		 5 : 2 0.0001 LOC_Os06g46410.1|12006.m09167|cDNA auxin response factor 6, putative, expressed 0 7
#74249 AGCTTGTATTCGTCGAC;
GAGCACAGGAATTGCAT;
GGAGGTGCAGCAGATGG;
GGTCGACGAATACAAGC;
TCCTGCCAAGGGTCGTC;
TTCCTGCCAAGGGTCGT		 5 : 2 0.0001 LOC_Os06g46410.2|12006.m091759|cDNA auxin response factor 6, putative, expressed 0 5
#6577 CAGGAACGTCCTCTCTT;
GCACACGAGTGAGGACA;
GGCACTGGACACATGGA;
GGTCTGTGAGGGCAGTC;
TGTCCTCACTCGTGTGC		 5 : 2 0.0001 LOC_Os01g33136.1|12001.m09631|cDNA retrotransposon protein, putative, unclassified 0 1
#891 CAACACATGTCTTTTCT;
CATAGACTGCCCTCACA;
GCACACGAGTGAGGACA;
GGTCTGTGAGGGCAGTC;
TGTCCTCACTCGTGTGC		 5 : 2 0.0001 LOC_Os01g06160.1|12001.m07247|cDNA retrotransposon protein, putative, Ty3-gypsy subclass 0 0
#95766 AAGTTGTGGCTAACAAT;
ACTTTGCCACAGTTTGC;
CAACAAATTGGGTCCCA;
CTTTGCCACAGTTTGCC;
GCAAGATTCTCTTAGGC;
GTGGCTTGCAACCAAAC;
GTTGTGGCTAACAATTT;
TAAGGTTAGGCAAATTT;
TAATGGTAAAGTGTGGC		 7 : 11 0.0001 LOC_Os08g34150.1|12008.m07404|cDNA OsTIL-2 - Oryza sativa Temperature-induced lipocalin-2, expressed 0 0
#137435 AAGATCAGGCGCCTCAA;
ACCGCTTCATGAACTTT;
AGATCAGGCGCCTCAAG;
GACATCGGAGGAAATGC;
GACCGCTTCATGAACTT;
GATCAGGCGCCTCAAGG;
GGCACCTGACTTCGCTA;
TAAGTATTTTGAAAGGC;
TACAGAGAGTGAAGTTG;
TTCCAAGAGAGAGTAAG		 7 : 11 0.0001 LOC_Os12g42380.1|12012.m08017|cDNA expressed protein 0 0
#26909 ACACTTTGCCACAGTTT;
ACTTTGCCACAGTTTGC;
AGGTGTTTGGTTGTAGC;
CAACAAATTGGGTCCCA;
CACAGTTGTGGCAAGAT;
CTTTGCCACAGTTTGCC;
GCAAACTGTGGCAAAGT;
GTGGGACCCAATTTGTT;
TGACAGGTGTTTGGTTG		 6 : 6 0.0001 LOC_Os03g17130.1|12003.m07144|cDNA helix-loop-helix DNA-binding domain containing protein, expressed 0 3
#32987 CATGTGTGGTGGAGAGA;
CTTGCTTATTCTAGGAG;
GCATGTGGAGTTTAGTA;
TACGCGTCGAATGGTCC;
TGCCCTCCTAGCCACTT;
TTCAAGTGGCTAGGAGG		 6 : 6 0.0001 LOC_Os03g53550.1|12003.m10325|cDNA retrotransposon protein, putative, unclassified, expressed 0 0
#95767 AAGTTGTGGCTAACAAT;
CAACAAATTGGGTCCCA;
CTTTTTTGAGCCATTGA;
GCAAGATTCTCTTAGGC;
GTGGGACCCAATTTGTT;
TAATGGTAAAGTGTGGC		 6 : 6 0.0001 LOC_Os08g34150.1|12008.m07404|cDNA OsTIL-2 - Oryza sativa Temperature-induced lipocalin-2, expressed 0 0
#137439 AATCAATTTCGCTCTCT;
ATCCTTGAGGCGTCTGC;
ATGGTTGCGAAGTCAGG;
CTTGAGGCGTCTGCTCC;
GATGGTTGCGAAGTCAG;
GGGAGTTCATGAAGCGG;
GGTTGCGAAGTCAGGTG;
GTACTTTCTCTGGTGTC;
GTTGCGAAGTCAGGTGC;
TAATCAATTTCGCTCTC;
TCACGTCCAGTGTTGTT;
TCCTTGAGGCGTCTGCT;
TGCACTGCTTCATGCCT;
TGGGAGTTCATGAAGCG;
TGGTTGCGAAGTCAGGT;
TTGCACTGCTTCATGCC		 7 : 12 0.0002 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
  Prev Page     Next Page     Page No. 1 / Total 31 Pages , 909 Records



Session Summary        
Users Input
Number of small RNAs submitted by user 55794,   download original FASTA file
Number of valid small RNAs after pre-processing 55794,   download processed FASTA file and LOG file
transcript/genomic library chosen by user Oryza sativa (rice) TIGR genome cDNA OSA1 Release 5(OSA1R5)
Number of phase-initiators submitted by user 275,   download original FASTA file
Number of valid phase-initiator sequences after pre-processing 142,   download processed FASTA file and LOG file
Mapping small RNAs onto transcript/genomic sequences
Number of total hits during mapping 137835
Number of small RNAs having hits 12343
Number of transcript/genomic sequences having hits 22910
Clustering phased small RNAs
Number of all phased small RNA clusters (having at least 2 phased small RNAs) 4949
Number of transcript/genomic sequences associated with the phased small RNA clusters 1333
Identifying cleavage site
Number of phased small RNA clusters with valid cleavage sites directed by phase-initiators 204