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List view: phased small RNA clusters [#Session ID: 1208317161086722]

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Cluster ID Phased small RNA(s) # of hit position
[phased:non-phased]
P-value Matched transcript Transcript description # of cleavage sites guided by input phase-initiator # of complementary regions
#90370 ACAGACTCCAAGACGCA;
ACAGCTAGCTACAAATC;
ACGCTGCGTCTTGGAGT;
AGAGAAGAGCAGCGGGC;
AGCCCGCTGCTCTTCTC;
CAGATTTGTAGCTAGCT;
GAGAAGAGCAGCGGGCT;
GTAGCCCGCTGCTCTTC;
TGGTCCCACCTGTCATA
7 : 8 3.202e-5 LOC_Os10g26470.1|12010.m05587|cDNA sucrose transporter 1, putative, expressed 0 5
#90373 ACAGACTCCAAGACGCA;
ACAGCTAGCTACAAATC;
ACGCTGCGTCTTGGAGT;
AGAGAAGAGCAGCGGGC;
AGCCCGCTGCTCTTCTC;
CAGATTTGTAGCTAGCT;
GAGAAGAGCAGCGGGCT;
GTAGCCCGCTGCTCTTC;
TGGTCCCACCTGTCATA
7 : 8 3.202e-5 LOC_Os10g26470.1|12010.m05587|cDNA sucrose transporter 1, putative, expressed 0 5
#89595 GCGCTGAAGTATGAGCC;
GTAGAGAAAATGCCTCG;
GTCCGAGTACCAAGCGC;
TAAGGACACAAGGTGAC;
TGGACTAGCCATTGCTT
5 : 2 0.0001 LOC_Os10g21190.1|12010.m05137|cDNA hypothetical protein 0 1
#12583 AAAACCGGACATCCGGC;
AAAAGGTCCCTCGGCGG;
AACCGCCGAGGGACCTT;
CCCACGCTGAGTCAGCC
4 : 0 0.0002 LOC_Os02g13020.1|12002.m06549|cDNA expressed protein 0 3
#75095 ACCTGATGGACCGTGGG;
ATATCTTAGGTCATTTG;
ATTGGTGTCCCTCAGCC;
GGCCCACGGTCCATCAG
4 : 0 0.0002 LOC_Os08g28610.1|12008.m06867|cDNA hypothetical protein 0 1
#110501 AAAGCGTCCTTTAGAAT;
AATCAATTTCGCTCTCT;
ACTTTCTCTGGTGTCTT;
AGATGGTTGCGAAGTCA;
GGTTGCGAAGTCAGGTG;
TAATCAATTTCGCTCTC;
TCACGTCCAGTGTTGTT;
TGCACTGCTTCATGCCT;
TGGGAGTTCATGAAGCG;
TGGTTGCGAAGTCAGGT;
TTGCACTGCTTCATGCC
7 : 12 0.0002 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
#110515 AAAGCGTCCTTTAGAAT;
AATCAATTTCGCTCTCT;
ACTTTCTCTGGTGTCTT;
AGATGGTTGCGAAGTCA;
GGTTGCGAAGTCAGGTG;
TAATCAATTTCGCTCTC;
TGAGAGAGTGCACTTTC;
TGCACTGCTTCATGCCT;
TGGGAGTTCATGAAGCG;
TGGTTGCGAAGTCAGGT;
TTGCACTGCTTCATGCC
7 : 12 0.0002 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
#86297 AGACGGTGCCACAGGCC;
AGCTGAGGGTCTTGCCT;
GAGGTAGACGGTTGTTC;
GGTTTGCGGACCCCCTA;
TGTCCTGTGGGACGGTG
5 : 3 0.0002 LOC_Os10g07470.1|12010.m04133|cDNA hypothetical protein 0 0
#89489 AGGTCGAGTTCCCGGCT;
AGTGGGATACTGATGTC;
ATATCCCACTGGAACTT;
CGGCCATGTTGAGCATG;
CGGGATCTCGACCTCCA;
GGTCGAGTTCCCGGCTA;
GTGACATTGATAGGAAG
6 : 8 0.0003 LOC_Os10g20480.2|12010.m50409|cDNA transposon protein, putative, CACTA, En/Spm sub-class, expressed 0 3
#89513 AGGTCGAGTTCCCGGCT;
AGTGGGATACTGATGTC;
ATATCCCACTGGAACTT;
CGGCCATGTTGAGCATG;
CGGGATCTCGACCTCCA;
GGTCGAGTTCCCGGCTA;
GTGACATTGATAGGAAG
6 : 8 0.0003 LOC_Os10g20480.3|12010.m21856|cDNA transposon protein, putative, CACTA, En/Spm sub-class, expressed 0 3
#89468 AGGTCGAGTTCCCGGCT;
AGTGGGATACTGATGTC;
ATATCCCACTGGAACTT;
CGGCCATGTTGAGCATG;
CGGGATCTCGACCTCCA;
GGTCGAGTTCCCGGCTA;
GTGACATTGATAGGAAG
6 : 8 0.0003 LOC_Os10g20480.1|12010.m05069|cDNA transposon protein, putative, CACTA, En/Spm sub-class, expressed 0 2
#110503 AATCAATTTCGCTCTCT;
ACTTTCTCTGGTGTCTT;
CTTTCTCTGGTGTCTTC;
GGTTGCGAAGTCAGGTG;
GTTGCGAAGTCAGGTGC;
TAATCAATTTCGCTCTC;
TCACGTCCAGTGTTGTT;
TGCACTGCTTCATGCCT;
TGGGAGTTCATGAAGCG;
TGGTTGCGAAGTCAGGT;
TTGCACTGCTTCATGCC;
TTGCGAAGTCAGGTGCT;
TTTCTCTGGTGTCTTCC
6 : 9 0.0005 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
#60091 AAGACACAGCCCCACGA;
ACGGTGAATCTGGTTGA;
ACGTTTCCGTGCGCCGA;
GTCGTGGGGCTGTGTCT
4 : 1 0.0006 LOC_Os07g04480.1|12007.m04917|cDNA mutator transposable element-related protein, putative, expressed 3 4
#54651 AAACATCACATCGAATC;
AAAGATTCGATGTGATG;
AAATCGCGAGACGAATC;
AATCGCGAGACGAATCT;
GCCATAAGTGCTACAGT
4 : 1 0.0006 LOC_Os06g27820.1|12006.m07327|cDNA expressed protein 0 3
#63470 AGGGCCTGTAGAGGGCA;
CCTACTAGCCGGTCAGA;
GGTCTTGCCCTCTACAG;
TCTCCACGTCCAACTCG
4 : 1 0.0006 LOC_Os07g19260.1|12007.m06363|cDNA retrotransposon protein, putative, unclassified 0 0
#20758 AAACTGTGGCAAAGTGT;
ACACTTTGCCACAGTTT;
AGCCACAGTTGTGGCAA;
CACAGTTGTGGCAAGAT;
GGACCCAATTTGTTGGA;
TGACAGGTGTTTGGTTG
5 : 5 0.0008 LOC_Os03g17130.1|12003.m07144|cDNA helix-loop-helix DNA-binding domain containing protein, expressed 0 3
#49050 ACACATTGCGTCTTGGA;
ACATTGCGTCTTGGAGT;
ACGGACTCCAAGACGCA;
GCTGTAACTGGCTACAG;
GGACTCCAAGACGCAAT;
GTATGACAGGTGGGACC;
GTGTATGACAGGTGGGA;
TGGTCCCACCTGTCATA
5 : 5 0.0008 LOC_Os05g49640.1|12005.m09034|cDNA expressed protein 0 2
#88002 AAGGCTTTGCCGTGGCA;
AGTACGGGTAAAGTGTA;
CACTGCAGTGTGAGTAA;
GGTTTACTCACACTGCA;
GTTTACTCACACTGCAG;
TCATGTGTTGGGCAAGT
5 : 6 0.0012 LOC_Os10g14180.2|12010.m065192|cDNA expressed protein 0 8
#88167 AAGGCTTTGCCGTGGCA;
AGTACGGGTAAAGTGTA;
CACTGCAGTGTGAGTAA;
GGTTTACTCACACTGCA;
GTTTACTCACACTGCAG;
TCATGTGTTGGGCAAGT
5 : 6 0.0012 LOC_Os10g14180.9|12010.m065364|cDNA expressed protein 0 8
#90368 ACAGACTCCAAGACGCA;
ACAGCTAGCTACAAATC;
AGCACAGACTCCAAGAC;
AGCCCGCTGCTCTTCTC;
CAGATTTGTAGCTAGCT;
TGGTCCCACCTGTCATA
5 : 6 0.0012 LOC_Os10g26470.1|12010.m05587|cDNA sucrose transporter 1, putative, expressed 0 5
#90375 ACAGACTCCAAGACGCA;
ACAGCTAGCTACAAATC;
AGCACAGACTCCAAGAC;
AGCCCGCTGCTCTTCTC;
CAGATTTGTAGCTAGCT;
TGGTCCCACCTGTCATA
5 : 6 0.0012 LOC_Os10g26470.1|12010.m05587|cDNA sucrose transporter 1, putative, expressed 0 5
#49053 ACATTGCGTCTTGGAGT;
ACGGACTCCAAGACGCA;
GCTGTAACTGGCTACAG;
GGACTCCAAGACGCAAT;
GTATGACAGGTGGGACC;
GTGTATGACAGGTGGGA;
TGGTCCCACCTGTCATA
5 : 6 0.0012 LOC_Os05g49640.1|12005.m09034|cDNA expressed protein 0 2
#9773 AGCGGCGACAGCCAACG;
CGGCAAAGGCGTCGCGA;
CGGCTCCCGCCACGCCC;
CGTTGGCTGTCGCCGCT;
CTCGAGGCAGCGTCCGC;
TTGGCTGTCGCCGCTAC
5 : 6 0.0012 LOC_Os01g64140.1|12001.m12529|cDNA hypothetical protein 0 0
#76087 AAACTGTGGCAAAGTGT;
ACACTTTGCCACAGTTT;
ACTTTGCCACAGTTTGC;
AGTTGTGGCAAGATTCC;
CACAGTTGTGGCAAGAT;
CACTTTGCCACAGTTTG;
GACAGGTGTTTGTTTGT;
GGACCCAATTTGTTGGA
5 : 6 0.0012 LOC_Os08g34150.1|12008.m07404|cDNA OsTIL-2 - Oryza sativa Temperature-induced lipocalin-2, expressed 0 0
#110484 AAGATCAGGCGCCTCAA;
AGAGATTCTAAAGGGCG;
AGATCAGGCGCCTCAAG;
AGATTCTAAAGGGCGCT;
AGGCACCTGACTTCGCT;
CACCTGACTTCGCTACC;
GACCGCTTCATGAACTT;
GAGACATCGGAGGAAAT;
GCACCTGACTTCGCTAC;
GGCACCTGACTTCGCTA
5 : 6 0.0012 LOC_Os12g42380.1|12012.m08017|cDNA expressed protein 0 0
#9768 CCTCGAACACCCGCCGC;
CGGCAAAGGCGTCGCGA;
CGGCTCCCGCCACGCCC;
CGTTGGCTGTCGCCGCT;
CTCGAACACCCGCCGCC;
CTCGAGGCAGCGTCCGC;
GCCGTAGCGGCGACAGC;
TCGAACACCCGCCGCCG;
TTGGCTGTCGCCGCTAC
6 : 12 0.0013 LOC_Os01g64140.1|12001.m12529|cDNA hypothetical protein 0 0
#9775 CCTCGAACACCCGCCGC;
CGGCAAAGGCGTCGCGA;
CGGCTCCCGCCACGCCC;
CGTTGGCTGTCGCCGCT;
CTCGAACACCCGCCGCC;
GAGACGGAGCGGCGACG;
GCCGTAGCGGCGACAGC;
TCGAACACCCGCCGCCG;
TTGGCTGTCGCCGCTAC
6 : 12 0.0013 LOC_Os01g64140.1|12001.m12529|cDNA hypothetical protein 0 0
#75884 AGTTATGCAGTTGCTGC;
AGTTATGCAGTTGCTGC;
CAAGTTATGCAGTTGCT;
CAAGTTATGCAGTTGCT;
GCAGCAACTGCATAACT;
GCAGCAACTGCATAACT
4 : 2 0.0014 LOC_Os08g33479.2|12008.m26694|cDNA expressed protein 1 9
#75886 AGTTATGCAGTTGCTGC;
AGTTATGCAGTTGCTGC;
CAAGTTATGCAGTTGCT;
CAAGTTATGCAGTTGCT;
GCAGCAACTGCATAACT;
GCAGCAACTGCATAACT
4 : 2 0.0014 LOC_Os08g33479.2|12008.m26694|cDNA expressed protein 0 9
#75887 AGTTATGCAGTTGCTGC;
AGTTATGCAGTTGCTGC;
CAAGTTATGCAGTTGCT;
CAAGTTATGCAGTTGCT;
GCAGCAACTGCATAACT;
GCAGCAACTGCATAACT
4 : 2 0.0014 LOC_Os08g33479.2|12008.m26694|cDNA expressed protein 0 9
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Session Summary        
Users Input
Number of small RNAs submitted by user 32352,   download original FASTA file
Number of valid small RNAs after pre-processing 32352,   download processed FASTA file and LOG file
transcript/genomic library chosen by user
Number of phase-initiators submitted by user 275,   download original FASTA file
Number of valid phase-initiator sequences after pre-processing 142,   download processed FASTA file and LOG file
Mapping small RNAs onto transcript/genomic sequences
Number of total hits during mapping 110769
Number of small RNAs having hits 7539
Number of transcript/genomic sequences having hits 17381
Clustering phased small RNAs
Number of all phased small RNA clusters (having at least 2 phased small RNAs) 2180
Number of transcript/genomic sequences associated with the phased small RNA clusters 674
Identifying cleavage site
Number of phased small RNA clusters with valid cleavage sites directed by phase-initiators 113