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List view: phased small RNA clusters [#Session ID: 1208320426650546]

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Cluster ID Phased small RNA(s) # of hit position
[phased:non-phased]
P-value Matched transcript Transcript description # of cleavage sites guided by input phase-initiator # of complementary regions
#130173 AGCCGAGCCAGGGAGGG;
CAGGCCGGTTGGGTGGC;
CCCTCCCTGGCTCGGCT;
CCGTGGTAGCGCGGTCC;
CGCGCCGCCGCCTAGGG;
CGGCCACCCAACCGGCC;
CTAAGCGTTGAGCCGTT;
CTTCTACCCCTCGCGGC;
GCAGCCGCGAGGGGTAG;
GCCGCCAGTTGCCGCCT;
GGAAATGGGGAGCGGCG
11 : 9 1.789e-9 LOC_Os03g53480.1|12003.m10317|cDNA hypothetical protein 0 0
#130175 AGCCGAGCCAGGGAGGG;
CAGGCCGGTTGGGTGGC;
CCACCCAACCGGCCTGA;
CCCTCCCTGGCTCGGCT;
CCGTGGTAGCGCGGTCC;
CGCGCCGCCGCCTAGGG;
CGGCCACCCAACCGGCC;
CTTCTACCCCTCGCGGC;
GCAGCCGCGAGGGGTAG;
GCCGCCAGTTGCCGCCT;
GGAAATGGGGAGCGGCG
10 : 7 7.079e-9 LOC_Os03g53480.1|12003.m10317|cDNA hypothetical protein 0 0
#167063 ATGGCTGGTGTGGACCC;
CGCTGGCACTGGACACA;
CGCTGGCACTGGACACA;
CGGGTCCACACCAGCCA;
GCACCATGCCTGCGCAA;
GGCTGGTGTGGACCCGG;
GTCCGTGTGTCCAGTGC;
GTGCCATGCTGTGTGAC;
GTGCCATGCTGTGTGAC;
TGCGCTGGCACTGGACA;
TGGCCAAGAGGGGACGT
10 : 10 5.220e-8 LOC_Os04g20240.1|12004.m07181|cDNA retrotransposon protein, putative, unclassified 0 0
#68686 ACGCCGTGCCGTCCAAC;
AGCGTCAGCTTCGTGCC;
AGGCACGAAGCTGACGC;
ATCCGACAAGGCGGCGC;
CACGACGACCACGGCGT;
CAGCGTCAGCTTCGTGC;
CGCACGACGACCACGGC;
CGCCATGGACGCCATCC;
CGGCAAGACACAGCATC;
CGGGATGCTGTGTCTTG;
CTGCAGCGGCGCCAAGG;
GCAAGACACAGCATCCC;
GGCAAGACACAGCATCC;
GGCGAACTGACGGCCGC;
TCCGACAAGGCGGCGCA;
TGCAGCGGCGCCAAGGT;
TGCGCCGCCTTGTCGGA;
TGCGGAGGGTGTCGGCG
12 : 21 5.578e-8 LOC_Os02g18750.1|12002.m07118|cDNA expressed protein 0 5
#68692 ACGCCGTGCCGTCCAAC;
AGCGTCAGCTTCGTGCC;
AGGCACGAAGCTGACGC;
ATCCGACAAGGCGGCGC;
CAGCGTCAGCTTCGTGC;
CGCACGACGACCACGGC;
CGCCATGGACGCCATCC;
CGGAGGGTGTCGGCGAC;
CGGCAAGACACAGCATC;
CGGGATGCTGTGTCTTG;
CTGCAGCGGCGCCAAGG;
CTGGATCCGACAAGGCG;
GCAAGACACAGCATCCC;
GGCAAGACACAGCATCC;
TGCAGCGGCGCCAAGGT;
TGCGCCGCCTTGTCGGA;
TGCGGAGGGTGTCGGCG;
TTGGACGGCACGGCGTC
12 : 21 5.578e-8 LOC_Os02g18750.1|12002.m07118|cDNA expressed protein 0 5
#68699 ACGCCGTGCCGTCCAAC;
AGCGTCAGCTTCGTGCC;
AGGCACGAAGCTGACGC;
ATCCGACAAGGCGGCGC;
CACGACGACCACGGCGT;
CAGCGTCAGCTTCGTGC;
CGCACGACGACCACGGC;
CGCCATGGACGCCATCC;
CGGCAAGACACAGCATC;
CGGGATGCTGTGTCTTG;
CTGCAGCGGCGCCAAGG;
GCAAGACACAGCATCCC;
GGCAAGACACAGCATCC;
GGCGAACTGACGGCCGC;
TCCGACAAGGCGGCGCA;
TGCAGCGGCGCCAAGGT;
TGCGCCGCCTTGTCGGA;
TGCGGAGGGTGTCGGCG
12 : 21 5.578e-8 LOC_Os02g18750.1|12002.m07118|cDNA expressed protein 0 5
#130162 AGCCGAGCCAGGGAGGG;
CAGGCCGGTTGGGTGGC;
CCCTCCCTGGCTCGGCT;
CCGTGGTAGCGCGGTCC;
CGCGCCGCCGCCTAGGG;
CGGCCACCCAACCGGCC;
GCAGCCGCGAGGGGTAG;
GCCGCCAGTTGCCGCCT;
GGAAATGGGGAGCGGCG
9 : 7 1.114e-7 LOC_Os03g53480.1|12003.m10317|cDNA hypothetical protein 0 0
#130171 AGCCGAGCCAGGGAGGG;
CAGGCCGGTTGGGTGGC;
CCCTCCCTGGCTCGGCT;
CCGTGGTAGCGCGGTCC;
CGCGCCGCCGCCTAGGG;
CGGCCACCCAACCGGCC;
GCAGCCGCGAGGGGTAG;
GCCGCCAGTTGCCGCCT;
GGAAATGGGGAGCGGCG
9 : 7 1.114e-7 LOC_Os03g53480.1|12003.m10317|cDNA hypothetical protein 0 0
#68656 ACGCCGTGCCGTCCAAC;
AGCGTCAGCTTCGTGCC;
AGGCACGAAGCTGACGC;
ATCCGACAAGGCGGCGC;
CACGACGACCACGGCGT;
CAGCGGCGCCAAGGTTC;
CAGCGTCAGCTTCGTGC;
CCGACAAGGCGGCGCAG;
CGCACGACGACCACGGC;
CGCCATGGACGCCATCC;
CTGCAGCGGCGCCAAGG;
GGCGAACTGACGGCCGC;
TCCCGCGAGGCGGTGCT;
TCCGACAAGGCGGCGCA;
TGCAGCGGCGCCAAGGT;
TGCGCCGCCTTGTCGGA;
TGCGGAGGGTGTCGGCG
11 : 19 2.917e-7 LOC_Os02g18750.1|12002.m07118|cDNA expressed protein 0 5
#68665 ACGCCGTGCCGTCCAAC;
AGCGTCAGCTTCGTGCC;
AGGCACGAAGCTGACGC;
ATCCGACAAGGCGGCGC;
CACGACGACCACGGCGT;
CAGCGGCGCCAAGGTTC;
CAGCGTCAGCTTCGTGC;
CCGACAAGGCGGCGCAG;
CGCACGACGACCACGGC;
CGCCATGGACGCCATCC;
CTGCAGCGGCGCCAAGG;
GGCGAACTGACGGCCGC;
TCCCGCGAGGCGGTGCT;
TCCGACAAGGCGGCGCA;
TGCAGCGGCGCCAAGGT;
TGCGCCGCCTTGTCGGA;
TGCGGAGGGTGTCGGCG
11 : 19 2.917e-7 LOC_Os02g18750.1|12002.m07118|cDNA expressed protein 0 5
#68684 ACGCCGTGCCGTCCAAC;
AGCGTCAGCTTCGTGCC;
AGGCACGAAGCTGACGC;
ATCCGACAAGGCGGCGC;
CACGACGACCACGGCGT;
CAGCGGCGCCAAGGTTC;
CAGCGTCAGCTTCGTGC;
CCGACAAGGCGGCGCAG;
CGCACGACGACCACGGC;
CGCCATGGACGCCATCC;
CGGCAAGACACAGCATC;
CTGCAGCGGCGCCAAGG;
GCAAGACACAGCATCCC;
GGCAAGACACAGCATCC;
GGCGAACTGACGGCCGC;
TCCGACAAGGCGGCGCA;
TGCAGCGGCGCCAAGGT;
TGCGCCGCCTTGTCGGA;
TGCGGAGGGTGTCGGCG
11 : 19 2.917e-7 LOC_Os02g18750.1|12002.m07118|cDNA expressed protein 0 5
#167066 ATGGCTGGTGTGGACCC;
CGCTGGCACTGGACACA;
CGGGTCCACACCAGCCA;
GCACCATGCCTGCGCAA;
GGCTGGTGTGGACCCGG;
GTCCGTGTGTCCAGTGC;
GTGCCATGCTGTGTGAC;
TGCGCTGGCACTGGACA;
TGGCCAAGAGGGGACGT;
TGGCCAAGAGGGGACGT
8 : 5 3.830e-7 LOC_Os04g20240.1|12004.m07181|cDNA retrotransposon protein, putative, unclassified 0 0
#167045 ATGGCTGGTGTGGACCC;
CAGGCATGGTGCGCATG;
CATGCGCACCATGCCTG;
CGCTGGCACTGGACACA;
GCACCATGCCTGCGCAA;
GGCTGGTGTGGACCCGG;
GTCCGTGTGTCCAGTGC;
GTCCGTGTGTCCAGTGC;
GTGCCATGCTGTGTGAC;
TGGCCAAGAGGGGACGT;
TGGCCAAGAGGGGACGT
10 : 14 4.086e-7 LOC_Os04g20240.1|12004.m07181|cDNA retrotransposon protein, putative, unclassified 0 0
#68655 ACGCCGTGCCGTCCAAC;
AGCGTCAGCTTCGTGCC;
AGGCACGAAGCTGACGC;
ATCCGACAAGGCGGCGC;
CACGACGACCACGGCGT;
CAGCGTCAGCTTCGTGC;
CGCACGACGACCACGGC;
CGCCATGGACGCCATCC;
CGGCAAGACACAGCATC;
CTGCAGCGGCGCCAAGG;
GGCGAACTGACGGCCGC;
TCCGACAAGGCGGCGCA;
TGCAGCGGCGCCAAGGT;
TGCGCCGCCTTGTCGGA;
TGCGGAGGGTGTCGGCG
11 : 21 6.097e-7 LOC_Os02g18750.1|12002.m07118|cDNA expressed protein 0 5
#167067 ATGGCTGGTGTGGACCC;
ATGGCTGGTGTGGACCC;
CGCTGGCACTGGACACA;
CGGGTCCACACCAGCCA;
GCACCATGCCTGCGCAA;
GGCTGGTGTGGACCCGG;
GTCCGTGTGTCCAGTGC;
GTGCCATGCTGTGTGAC;
TGCGCTGGCACTGGACA;
TGGCCAAGAGGGGACGT;
TGGCCAAGAGGGGACGT
9 : 10 6.877e-7 LOC_Os04g20240.1|12004.m07181|cDNA retrotransposon protein, putative, unclassified 0 0
#130176 AGCCGAGCCAGGGAGGG;
CACCCAACCGGCCTGAC;
CAGGCCGGTTGGGTGGC;
CCACCCAACCGGCCTGA;
CCCTCCCTGGCTCGGCT;
CCGAGCCAGGGAGGGAT;
CGCGCCGCCGCCTAGGG;
CGGCCACCCAACCGGCC;
GCAGCCGCGAGGGGTAG;
GCCGCCAGTTGCCGCCT;
GGAAATGGGGAGCGGCG
8 : 6 8.021e-7 LOC_Os03g53480.1|12003.m10317|cDNA hypothetical protein 0 0
#454271 CCCTTTGCCCGGTGATG;
CGGCGACAGATTCGGCG;
CGGCGGCGACAGATTCG;
GCCGAATCTGTCGCCGC;
GCCGTCACCGCTGTCGC;
GGCGACAGCGGTGACGG;
TGGCGGCAGCGCCGACG
6 : 1 1.905e-6 LOC_Os11g29600.1|12011.m06869|cDNA RING zinc finger ankyrin protein, putative 0 0
#68680 CACTGCCGTCGACGTGT;
CCACTGCCGTCGACGTG;
CCGGCGTGGGCCTGGGC;
CGACCTCCACGCCGTCG;
CGCCGATCCGGGCGACG;
CGGCGTGGGCCTGGGCG;
GCCGCCCAGGCCCACGC;
TCAAGGCAAGCCGTGGC;
TCGGCCGCTACCACGTA;
TGCCGTCGACGTGTGCC;
TGGCCGGTGGCAGTAGT;
TGTACTACTGCCACCGG
9 : 14 4.411e-6 LOC_Os02g18750.1|12002.m07118|cDNA expressed protein 0 5
#301914 CACCAACCCAGGAGTTG;
CACGCTTCCGGGGATCG;
CCATCGATCCACCGATC;
CCTCCACGCTTCCGGGG;
CGCGATCCCCGGAAGCG;
CGGCGAGAGCTGGGTAG;
GTTAGTCTGGGACGCGG;
TAACCCAGCAGCAACTG;
TGATCGGTGGATCGATG;
TGGCGTTGGACGGGTGA
9 : 14 4.411e-6 LOC_Os07g02490.1|12007.m04721|cDNA retrotransposon protein, putative, LINE subclass 0 5
#167062 ATGGCTGGTGTGGACCC;
CGCTGGCACTGGACACA;
CGCTGGCACTGGACACA;
CGGGTCCACACCAGCCA;
GGCTGGTGTGGACCCGG;
GTCCGTGTGTCCAGTGC;
GTGCCATGCTGTGTGAC;
TGCGCTGGCACTGGACA;
TGGCCAAGAGGGGACGT
8 : 9 4.827e-6 LOC_Os04g20240.1|12004.m07181|cDNA retrotransposon protein, putative, unclassified 0 0
#301838 CACCAACCCAGGAGTTG;
CCATCGATCCACCGATC;
CCTCCACGCTTCCGGGG;
CGCGTCCCAGACTAACA;
CGGCGAGAGCTGGGTAG;
GTTAGTCTGGGACGCGG;
TAACCCAGCAGCAACTG;
TGATCGGTGGATCGATG;
TGGCGTTGGACGGGTGA
9 : 15 6.546e-6 LOC_Os07g02490.1|12007.m04721|cDNA retrotransposon protein, putative, LINE subclass 0 5
#455490 AGGCCGAGCCGTCGCCG;
CGGCGACGAGGTCTAGC;
CGGCGACGGGGCTCCGG;
CTCCGTTTGCGCCGCCG;
GTTCGCCGGCGAGCACG
5 : 0 7.225e-6 LOC_Os11g31010.1|12011.m07006|cDNA transposon protein, putative, unclassified 0 0
#351361 AACCACTCCGAGCCCGT;
ACGAAACCCGAGCGTGC;
CAAGGAGGACCTGAGGG;
CAAGGGATGGGTGGCGT;
CATCTGGAAGACGGCCG;
CCACCTCCTGGTGCGTC;
CCACTCCGAGCCCGTCG;
CGACGCACCAGGAGGTG;
CGACGGGCTCGGAGTGG;
CGCCCTTGCGCGGTGAT;
CGCGGGAGTCCGGGTGC;
CGGCCCAGGTAGGTGTC;
CGGGAGTCCGGGTGCCA;
CTGGCACCCGGACTCCC;
GACGACGGGCTCGGAGT;
GACGCACCAGGAGGTGG;
GGACACCTACCTGGGCC;
GGAGGACCTGAGGGGCG;
GGCGGCCCAGGTAGGTG;
GGGCGGCCCAGGTAGGT;
TGCCACCTCCTGGTGCG
13 : 47 7.247e-6 LOC_Os08g12410.1|12008.m05370|cDNA pectinesterase PPE8B precursor, putative, expressed 0 0
#351404 AACCACTCCGAGCCCGT;
ACGAAACCCGAGCGTGC;
CAAGGAGGACCTGAGGG;
CAAGGGATGGGTGGCGT;
CATCTGGAAGACGGCCG;
CCACCTCCTGGTGCGTC;
CCACTCCGAGCCCGTCG;
CGACGCACCAGGAGGTG;
CGACGGGCTCGGAGTGG;
CGCCCTTGCGCGGTGAT;
CGCGGGAGTCCGGGTGC;
CGGCCCAGGTAGGTGTC;
CGGGAGTCCGGGTGCCA;
CTGGCACCCGGACTCCC;
GACGACGGGCTCGGAGT;
GACGCACCAGGAGGTGG;
GGACACCTACCTGGGCC;
GGAGGACCTGAGGGGCG;
GGCGGCCCAGGTAGGTG;
GGGCGGCCCAGGTAGGT;
TGCCACCTCCTGGTGCG
13 : 47 7.247e-6 LOC_Os08g12410.1|12008.m05370|cDNA pectinesterase PPE8B precursor, putative, expressed 0 0
#68677 ACGCCGTGCCGTCCAAC;
ATCCGACAAGGCGGCGC;
CACGACGACCACGGCGT;
CAGCGTCAGCTTCGTGC;
CGCACGACGACCACGGC;
CGCCATGGACGCCATCC;
CTGCAGCGGCGCCAAGG;
GGCGAACTGACGGCCGC;
TCCCGCGAGGCGGTGCT;
TCCGACAAGGCGGCGCA;
TGCAGCGGCGCCAAGGT;
TGCGCCGCCTTGTCGGA;
TGCGGAGGGTGTCGGCG
10 : 22 7.869e-6 LOC_Os02g18750.1|12002.m07118|cDNA expressed protein 0 5
#119425 CACAGACCGGTCAGATC;
CAGACCGGTCAGATCGC;
CAGTCGCGGTATGTGAC;
CCCGTTTCGGCCCCGAG;
CCGCGATCTGACCGGTC;
CGCGGTATGTGACCGGT;
CGGCGTGGCGCGCTCGT;
CGGTCACATACCGCGAC;
GTCACAGACCGGATAAG;
GTCCTCGGGGCCGAAAC
8 : 10 7.930e-6 LOC_Os03g39910.1|12003.m09074|cDNA gene X-like protein, putative, expressed 0 1
#119441 CACAGACCGGTCAGATC;
CAGACCGGTCAGATCGC;
CAGTCGCGGTATGTGAC;
CCCGTTTCGGCCCCGAG;
CCGCGATCTGACCGGTC;
CGCGGTATGTGACCGGT;
CGGCGTGGCGCGCTCGT;
CGGTCACATACCGCGAC;
GTCACAGACCGGATAAG;
GTCCTCGGGGCCGAAAC
8 : 10 7.930e-6 LOC_Os03g39910.1|12003.m09074|cDNA gene X-like protein, putative, expressed 0 1
#119542 CACAGACCGGTCAGATC;
CAGACCGGTCAGATCGC;
CAGTCGCGGTATGTGAC;
CCCGTTTCGGCCCCGAG;
CCGCGATCTGACCGGTC;
CGCGGTATGTGACCGGT;
CGGCGTGGCGCGCTCGT;
CGGTCACATACCGCGAC;
GTCACAGACCGGATAAG;
GTCCTCGGGGCCGAAAC
8 : 10 7.930e-6 LOC_Os03g39910.2|12003.m101393|cDNA gene X-like protein, putative, expressed 0 1
#119558 CACAGACCGGTCAGATC;
CAGACCGGTCAGATCGC;
CAGTCGCGGTATGTGAC;
CCCGTTTCGGCCCCGAG;
CCGCGATCTGACCGGTC;
CGCGGTATGTGACCGGT;
CGGCGTGGCGCGCTCGT;
CGGTCACATACCGCGAC;
GTCACAGACCGGATAAG;
GTCCTCGGGGCCGAAAC
8 : 10 7.930e-6 LOC_Os03g39910.2|12003.m101393|cDNA gene X-like protein, putative, expressed 0 1
#138037 CAATCCTGGAGCCAGCT;
CAGCTGGCCCTCCGAGC;
CAGCTGGCTCCAGGATT;
CCCAGCCAGGAGGGGAC;
CCGCTCGGAGGGCCAGC;
CGACTCTGCGCTCGCTT;
CGCTCGGAGGGCCAGCT;
CTGGCTCCAGGATTGGT;
GCTCGGAGGGCCAGCTG;
GCTGGCTCCAGGATTGG;
GTCCCCTCCTGGCTGGG;
TGTCCCCTCCTGGCTGG
7 : 6 1.058e-5 LOC_Os04g02600.1|12004.m05572|cDNA retrotransposon protein, putative, LINE subclass 0 9
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Session Summary        
Users Input
Number of small RNAs submitted by user 117577,   download original FASTA file
Number of valid small RNAs after pre-processing 117577,   download processed FASTA file and LOG file
transcript/genomic library chosen by user Oryza sativa (rice) TIGR genome cDNA OSA1 Release 5(OSA1R5)
Number of phase-initiators submitted by user 275,   download original FASTA file
Number of valid phase-initiator sequences after pre-processing 142,   download processed FASTA file and LOG file
Mapping small RNAs onto transcript/genomic sequences
Number of total hits during mapping 508456
Number of small RNAs having hits 28826
Number of transcript/genomic sequences having hits 36361
Clustering phased small RNAs
Number of all phased small RNA clusters (having at least 2 phased small RNAs) 11056
Number of transcript/genomic sequences associated with the phased small RNA clusters 2762
Identifying cleavage site
Number of phased small RNA clusters with valid cleavage sites directed by phase-initiators 278