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List view: phased small RNA clusters [#Session ID: 1208360514052971]

  Prev Page     Next Page     Page No. 1 / Total 14 Pages , 411 Records    
Cluster ID Phased small RNA(s) # of hit position
[phased:non-phased]
P-value Matched transcript Transcript description # of cleavage sites guided by input phase-initiator # of complementary regions
#116821 AAAGCGTCCTTTAGAAT;
AAGGCATGAAGCAGTGC;
AATCAATTTCGCTCTCT;
ATCCTTGAGGCGTCTGC;
ATGGTTGCGAAGTCAGG;
CGCTTCATGAACTCCCA;
GGCATGAAGCAGTGCAA;
GGTTGCGAAGTCAGGTG;
TAATCAATTTCGCTCTC;
TCACGTCCAGTGTTGTT;
TCCTTGAGGCGTCTGCT;
TGCACTGCTTCATGCCT;
TGGGAGTTCATGAAGCG;
TGGTTGCGAAGTCAGGT;
TTGCACTGCTTCATGCC
9 : 8 2.158e-7 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
#116838 AAAGCGTCCTTTAGAAT;
AAGGCATGAAGCAGTGC;
AATCAATTTCGCTCTCT;
ATCCTTGAGGCGTCTGC;
ATGGTTGCGAAGTCAGG;
CGCTTCATGAACTCCCA;
GGCATGAAGCAGTGCAA;
GGTTGCGAAGTCAGGTG;
TAATCAATTTCGCTCTC;
TCCTTGAGGCGTCTGCT;
TGAGAGAGTGCACTTTC;
TGCACTGCTTCATGCCT;
TGGGAGTTCATGAAGCG;
TGGTTGCGAAGTCAGGT;
TTGCACTGCTTCATGCC
9 : 9 3.946e-7 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
#116834 AAGGCATGAAGCAGTGC;
AATCAATTTCGCTCTCT;
ATCCTTGAGGCGTCTGC;
ATGGTTGCGAAGTCAGG;
CGCTTCATGAACTCCCA;
GGCATGAAGCAGTGCAA;
GGTTGCGAAGTCAGGTG;
TAATCAATTTCGCTCTC;
TCACGTCCAGTGTTGTT;
TCCTTGAGGCGTCTGCT;
TGCACTGCTTCATGCCT;
TGGGAGTTCATGAAGCG;
TGGTTGCGAAGTCAGGT;
TTGCACTGCTTCATGCC
8 : 7 1.551e-6 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
#116840 AAGGCATGAAGCAGTGC;
ATCCTTGAGGCGTCTGC;
ATGGTTGCGAAGTCAGG;
CGCTTCATGAACTCCCA;
GGCATGAAGCAGTGCAA;
GGTTGCGAAGTCAGGTG;
TCACGTCCAGTGTTGTT;
TCCTTGAGGCGTCTGCT;
TGCACTGCTTCATGCCT;
TGGGAGTTCATGAAGCG;
TGGTTGCGAAGTCAGGT;
TTGCACTGCTTCATGCC
7 : 4 2.582e-6 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
#99770 GCCTACCACTGAAAGCA;
GCTTTCAGTGGTAGGCG;
GGGGTAGGGTTTGCGTG;
GTACCCGTCGACAGCGA;
GTGCTTTCAGTGGTAGG;
GTTCATAGGGGTGAGTG;
TCGCTGTCGACGGGTAC
6 : 2 6.428e-6 LOC_Os11g11620.1|12011.m05354|cDNA ZmEBE-1 protein, putative 0 1
#99764 GCCTACCACTGAAAGCA;
GGGGTAGGGTTTGCGTG;
GTACCCGTCGACAGCGA;
GTGCTTTCAGTGGTAGG;
GTTCATAGGGGTGAGTG;
TCGCTGTCGACGGGTAC;
TGTGCTTTCAGTGGTAG
6 : 3 1.653e-5 LOC_Os11g11620.1|12011.m05354|cDNA ZmEBE-1 protein, putative 0 1
#99775 GCCTACCACTGAAAGCA;
GGGGTAGGGTTTGCGTG;
GTACCCGTCGACAGCGA;
GTGCTTTCAGTGGTAGG;
GTTCATAGGGGTGAGTG;
TCGCTGTCGACGGGTAC;
TGTGCTTTCAGTGGTAG
6 : 3 1.653e-5 LOC_Os11g11620.1|12011.m05354|cDNA ZmEBE-1 protein, putative 0 1
#116828 AAGGCATGAAGCAGTGC;
ATCCTTGAGGCGTCTGC;
ATGGTTGCGAAGTCAGG;
CGCTTCATGAACTCCCA;
GGCATGAAGCAGTGCAA;
TCACGTCCAGTGTTGTT;
TCCTTGAGGCGTCTGCT;
TGGGAGTTCATGAAGCG;
TTGCACTGCTTCATGCC
7 : 7 1.896e-5 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
#116823 AAGGCATGAAGCAGTGC;
AATCAATTTCGCTCTCT;
ATCCTTGAGGCGTCTGC;
ATGGTTGCGAAGTCAGG;
GGTTGCGAAGTCAGGTG;
GTTGCGAAGTCAGGTGC;
TAATCAATTTCGCTCTC;
TCACGTCCAGTGTTGTT;
TCCTTGAGGCGTCTGCT;
TGCACTGCTTCATGCCT;
TGGGAGTTCATGAAGCG;
TGGTTGCGAAGTCAGGT;
TTGCACTGCTTCATGCC
7 : 8 3.202e-5 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
#104318 AGACATGGTTTCTACAC;
ATCTCACATGATGTCTT;
CCAAGACATCATGTGAG;
GAGACATGGTTTCTACA;
GGACACCATCCTAGTCA;
TGACTAGGATGGTGTCC
5 : 1 3.481e-5 LOC_Os11g36410.1|12011.m07493|cDNA Leucine Rich Repeat family protein, expressed 1 5
#104316 AGACATGGTTTCTACAC;
ATCTCACATGATGTCTT;
CCAAGACATCATGTGAG;
GAGACATGGTTTCTACA;
GGACACCATCCTAGTCA;
TGACTAGGATGGTGTCC
5 : 1 3.481e-5 LOC_Os11g36410.1|12011.m07493|cDNA Leucine Rich Repeat family protein, expressed 0 5
#30021 AGAAAGTCATTAAGATG;
ATTCTTCCACACAAGAT;
ATTTCTCGATGCCCATG;
CAATCTTGTGTGGAAGA;
GTGTCAAGATGAAATAT
5 : 1 3.481e-5 LOC_Os04g03884.1|12004.m35070|cDNA transposon protein, putative, CACTA, En/Spm sub-class, expressed 0 3
#45010 CAAGATAGTTGGCATTG;
CAGTGGCAGCGGGGAGG;
CCTCTATCCAGTTTGTG;
CGAGCGGAGAGGAATAT;
GTGAGTGCGCATGAGGA
5 : 1 3.481e-5 LOC_Os05g13400.1|12005.m05755|cDNA retrotransposon protein, putative, unclassified 0 1
#116832 AAGGCATGAAGCAGTGC;
ATGGTTGCGAAGTCAGG;
GGTTGCGAAGTCAGGTG;
GTTGCGAAGTCAGGTGC;
TCACGTCCAGTGTTGTT;
TCCTTGAGGCGTCTGCT;
TGCACTGCTTCATGCCT;
TGGGAGTTCATGAAGCG;
TGGTTGCGAAGTCAGGT;
TTGCACTGCTTCATGCC;
TTGCGAAGTCAGGTGCT
6 : 4 3.584e-5 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
#116841 AAGGCATGAAGCAGTGC;
ATCCTTGAGGCGTCTGC;
ATGGTTGCGAAGTCAGG;
GGTTGCGAAGTCAGGTG;
GTTGCGAAGTCAGGTGC;
TCACGTCCAGTGTTGTT;
TCCTTGAGGCGTCTGCT;
TGCACTGCTTCATGCCT;
TGGGAGTTCATGAAGCG;
TGGTTGCGAAGTCAGGT;
TTGCACTGCTTCATGCC
6 : 4 3.584e-5 LOC_Os12g42390.1|12012.m08018|cDNA hypothetical protein 0 0
#82198 AAATTGTTAGCCACAAC;
AAGTTGTGGCTAACAAT;
ACTTTGCCACAGTTTGC;
AGTTGTGGCAAGATTCC;
AGTTGTGGCTAACAATT;
CTAAGGTTAGGCAAATT;
GCAAACTGTGGCAAAGT;
GTTGTGGCAAGATTCCC
6 : 5 6.911e-5 LOC_Os08g34150.1|12008.m07404|cDNA OsTIL-2 - Oryza sativa Temperature-induced lipocalin-2, expressed 0 0
#23063 AAATTGTTAGCCACAAC;
AAGTTGTGGCTAACAAT;
AGTTGTGGCAAGATTCC;
CTAAGGTTAGGCAAATT;
GGAACCAAACAGCCCCG;
GTTGTGGCAAGATTCCC;
TGACAGGTGTTTGGTTG;
TGGCAAGATTCCCTTAG
7 : 10 7.950e-5 LOC_Os03g17130.1|12003.m07144|cDNA helix-loop-helix DNA-binding domain containing protein, expressed 0 3
#35805 AGTGACTTCGTCAATCT;
CTCCCATGGGGAGTCGA;
GATGTATCCGTCGACAG;
GCCTACCACTGAAAGCA;
GTGCTTTCAGTGGTAGG;
GTTGTGCTTTCAGTGGT;
TGTGCTTTCAGTGGTAG
5 : 2 0.0001 LOC_Os04g20180.1|12004.m07175|cDNA expressed protein 0 5
#99774 GCCTACCACTGAAAGCA;
GGGGTAGGGTTTGCGTG;
GTACCCGTCGACAGCGA;
GTTCATAGGGGTGAGTG;
TCGCTGTCGACGGGTAC
5 : 2 0.0001 LOC_Os11g11620.1|12011.m05354|cDNA ZmEBE-1 protein, putative 0 1
#13858 AGCCAGCTTCTGAGAAT;
CCAGATTCTCAGAAGCT;
GAAGCTGCCCCAAACAG;
GATTCTCAGAAGCTGGC;
GCTGCAGCTGGGACAAA;
GGAAAAGCTCTGAAACC
5 : 2 0.0001 LOC_Os02g11970.1|12002.m33614|cDNA expressed protein 0 0
#13867 AGCCAGCTTCTGAGAAT;
CCAGATTCTCAGAAGCT;
GAAGCTGCCCCAAACAG;
GATTCTCAGAAGCTGGC;
GCTGCAGCTGGGACAAA;
GGAAAAGCTCTGAAACC
5 : 2 0.0001 LOC_Os02g11970.2|12002.m06445|cDNA expressed protein 0 0
#59145 ATCTGACGATCAGGTTG;
CCTTATCCAATACGGTA;
CTTATCAAACCAGGACT;
GAGACAACCTGATCGTC;
TGACTTGGGTATTACGT
5 : 2 0.0001 LOC_Os06g25010.1|12006.m07149|cDNA xylanase inhibitor protein 1 precursor, putative, expressed 0 0
#70127 AACTGTGCAATTGATTT;
AGCATTAAATGTGAACG;
GTCTCGCGGTTTACAGG;
TTGAGCCTAATTACGCC
4 : 0 0.0002 LOC_Os07g25700.1|12007.m06848|cDNA expressed protein 0 7
#30019 AGAAAGTCATTAAGATG;
ATTCTTCCACACAAGAT;
ATTTCTCGATGCCCATG;
CAATCTTGTGTGGAAGA
4 : 0 0.0002 LOC_Os04g03884.1|12004.m35070|cDNA transposon protein, putative, CACTA, En/Spm sub-class, expressed 0 3
#25441 CACTCTCGCAGCGGCGG;
CCGCCGCCGCTGCGAGA;
CGCACTCTCGCAGCGGC;
CTGTTTTCGTCGGGTCT;
GTCTGACCGGCCACATA
4 : 0 0.0002 LOC_Os03g34290.1|12003.m08668|cDNA retrotransposon protein, putative, Ty3-gypsy subclass 0 0
#59136 ATCTGACGATCAGGTTG;
CCTTATCCAATACGGTA;
CTTATCAAACCAGGACT;
GAGACAACCTGATCGTC
4 : 0 0.0002 LOC_Os06g25010.1|12006.m07149|cDNA xylanase inhibitor protein 1 precursor, putative, expressed 0 0
#107307 ACGTAATGTGTGTATGA;
CAGCTGCAGCACGGACT;
CGGGCTATAGATCTGTA;
GCTACAGATCTATAGCC;
GGAGTCCGTGCTGCAGC;
GTTATCTATAGGCTCTC;
TGGAGTCCGTGCTGCAG;
TTTTTCTACTTGGAAGA
7 : 12 0.0002 LOC_Os12g04424.1|12012.m04436|cDNA strictosidine synthase 3 precursor, putative, expressed 0 0
#107313 ACGTAATGTGTGTATGA;
CAGCTGCAGCACGGACT;
CGGGCTATAGATCTGTA;
GCTACAGATCTATAGCC;
GGAGTCCGTGCTGCAGC;
GTTATCTATAGGCTCTC;
TGGAGTCCGTGCTGCAG;
TTTTTCTACTTGGAAGA
7 : 12 0.0002 LOC_Os12g04424.1|12012.m04436|cDNA strictosidine synthase 3 precursor, putative, expressed 0 0
#13862 AGCCAGCTTCTGAGAAT;
GAAGCTGCCCCAAACAG;
GATTCTCAGAAGCTGGC;
GCTGCAGCTGGGACAAA;
GGAAAAGCTCTGAAACC
5 : 3 0.0002 LOC_Os02g11970.1|12002.m33614|cDNA expressed protein 0 0
#13871 AGCCAGCTTCTGAGAAT;
GAAGCTGCCCCAAACAG;
GATTCTCAGAAGCTGGC;
GCTGCAGCTGGGACAAA;
GGAAAAGCTCTGAAACC
5 : 3 0.0002 LOC_Os02g11970.2|12002.m06445|cDNA expressed protein 0 0
  Prev Page     Next Page     Page No. 1 / Total 14 Pages , 411 Records



Session Summary        
Users Input
Number of small RNAs submitted by user 32623,   download original FASTA file
Number of valid small RNAs after pre-processing 32623,   download processed FASTA file and LOG file
transcript/genomic library chosen by user Oryza sativa (rice) TIGR genome cDNA OSA1 Release 5(OSA1R5)
Number of phase-initiators submitted by user 275,   download original FASTA file
Number of valid phase-initiator sequences after pre-processing 142,   download processed FASTA file and LOG file
Mapping small RNAs onto transcript/genomic sequences
Number of total hits during mapping 117130
Number of small RNAs having hits 7921
Number of transcript/genomic sequences having hits 18760
Clustering phased small RNAs
Number of all phased small RNA clusters (having at least 2 phased small RNAs) 2458
Number of transcript/genomic sequences associated with the phased small RNA clusters 775
Identifying cleavage site
Number of phased small RNA clusters with valid cleavage sites directed by phase-initiators 104